Ptra017449.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Philereme transversata
Gene Symbol
-
Assembly
GCA_963924445.1
Location
OZ004345.1:13340173-13363696[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.00043 0.042 15.4 3.4 1 23 243 265 243 265 0.98
2 11 0.00012 0.012 17.1 6.7 1 23 271 293 271 293 0.97
3 11 0.0021 0.2 13.2 7.0 1 23 299 321 299 321 0.99
4 11 7.3e-05 0.0072 17.8 2.0 1 23 327 349 327 349 0.98
5 11 7.7e-06 0.00076 20.9 1.0 1 23 355 377 355 377 0.97
6 11 8.1e-06 0.00079 20.8 0.0 1 23 383 405 383 405 0.98
7 11 8.8e-05 0.0087 17.5 0.4 1 23 410 432 410 432 0.96
8 11 0.006 0.59 11.8 0.4 3 19 440 456 439 459 0.96
9 11 4.3e-05 0.0043 18.5 0.4 1 23 568 590 568 590 0.97
10 11 0.00016 0.016 16.7 1.4 1 23 732 754 732 754 0.96
11 11 4.6e-05 0.0046 18.4 4.3 1 23 764 786 764 786 0.97

Sequence Information

Coding Sequence
ATGTGTATGCCAACGCCTAACAATGTGTCTGGTTTTGGGGGATACTCATGGTTTACCAGCTCAGCTGACCTTACTAAGAATGAGGTGGATACTCCAAGTAGCCTCAGCTACACACTTGGGAGCAATGTCTCACCCGAAACCACCCTAACAGTGATGTCTCATAAGACCCCCCAAGTGCAAGAGAAAGTCGGCACAGTATCGGTAGCCGTGTCAAATACTGGGGCGCAAGTGACTAGGGTGGTGACAACTGGTACTCCAGTCACAGCAAGGAGAGCTATGTTTGTACTGAATGAGACACCGCATACCATAAACAGAGTTACACAACAGAATCAAACTGCTACAATACACACAACAAATCTAGCATCAAAGCCATTTATGACTCCACTTGGGCCCATCCAGCTAACTGCTGAAGAATGCAATGAGATCCTTATGAAGAGAGCTCTCCAAGCTCAGGGGATTGCCACCCCGGTTATCGATGCATCACAACTGAATCATACTATACTGAATGGAAGTCTTAAAAGCCTCACGGATGGTAATACACAGCAGCAGACACAACAGCAGGAGACAATACAGACCACTACAGTGCAACATCATCTGTTACATACCAAGCAGGAGCCAGGGACCACGAATAATTCACCTAAAACGGTATATTCGCAGACGGAGTTGCTGTCCACCAACTCAGTTATGACATCGGCGCAAGCGCCTGCCACTGTGAAAGAGCGACCCTATTCCTGTGACGAGTGTGGAAAGAGCTTTCTGTTGAAACATCATCTTACTACGCACGCGAGGGTTCATACTGGTGAGAGGCCCCATGTTTGCGCGCACTGCGGCAAGGCGTTCGCGAGGAAGCATTGTTTGAATACCCATATGTTGCTGCATTCTGCTGAGCGGCCGTACAAGTGTCATGAGTGTAAGATGGCATTCACGCTGAAGCATCATCTTGTTACGCATTCGAGGgtgCACAGTCGCGACCGGCCATACGTTTGTCAGGAGTGCGGTCGATCGTTCCCGCTGAACAGACATCTCGTGACGCATAGGAAATACCACGCCGGCGAGAGGCCTTATGTCTGCAACGATTGTGGAGAGAGCTTTGCACAGAAGGAGCACCTGGTAATGCACAGTCGCTTCCACGGGTCGCTGTCGCCGTTCGTGTGCCCGGACTGCGGCGCCGCCTTCGCGCGCAAGTTCCAGCTCGTGAACCATGGGCGCGTGCACGGCCGCGTGCCGCACGCCTGCCCCGTCTGCGGCAAGGAGTTCCTGCAGAAGCGCACGCTCGTCGCGCACATGAAAATACACACAGGAGAGGGTGTAGTCGCTTGCTTAGATTGCGGCGAAGCCTTCAAATCTAAGCCCGACCTAACGCAACACTGCAAAGCAACGCGGCATTGTACCTACGGCCCTACCACACAAACGATACAAGTTGAACAACAACAGACTCAACAACAACAACAGCAGcagcaacaacaacaacaacaacagcaGCAACAGCAACAAACAACAGTTATAAAGTCTGATGACTTTAATATCAAACCGCAGATTGTACAGGTACAACAACAGTTGCAACAAATGGCGCAACAACAAcaacagcagcagcagcagcaacaACAAGCAACGGTTATAAAGTCGGATGACTTCAAACCACAGATTGTCCAGGTTATTGGTGCGGACGGACAAATCGTGTCAGAGAAGACGACTCCGGCGTACGCGTGTCCTGAGTGCGGCTCGTGTTTTAATACAAAGGAGGCGCTGTCCCTGCACGTGCGCCTGCACGCGGGGGACCGCACGTGCGTGACGGACCTGTGCGCGCTCACGGCGGCGCTGCAGCCCGGCCTCGtcgccgccgccaccgccgcgCACAACGCCAACAACCAACCAGCTGTCATATTGCGGAATAATATTATCACAACTGTCATATTGCGGAATAATGCTGCAACACCTGTTATATTGCGGAATAACGTTGCCACAACTGTCAAATTCCGGAATAATGTGGAAACAGCTGTCATATTGTGGAATAATGTGGCCACAACTGTCAAACTGCGGAATAATGTTGCTACAACTGTCATATTGCGGGATAATGTTGCGAGTGTTGTTGGAGTAGATCAACATGTTCAAATCATATCTTCGAGTCCCAGTAATGCTGTTCACACGCAAGTTATAGCAACGAATCACCATGCGGCGCCTCGACCTAAAATGCACTTCTGTGGCGAGTGTGGCAAGGGATTCGCAGCTAAACACGGATTGTTGGCGCATCAAAGGAGGCACCCAGACGGCAGCTGTACGCTGCGCACGCACGTGTGCGATCAATGCGGCAAGGCGTTCTTCCAGAAGAATCACCTGATGCTGCACCAACGCCAGCACATGGATTTGACTAGAAATAACTCGCAACAACAGCAACAGCAACAGCAGCAGCAGCAACAGCAAGCGCAGCAGCAAGCGGCGCAGCAAGTCGCGCAACAGGTCGCGCAACAGGTCGTGCAACAGGTGCAGCAACAAGTACAGCAAGTGCAAGTGCAACATCAACAGACGAGTATGGAGATGGAGCAAGATCACCAACAGCCGACGCATATTCAAGTGGTGAATCGATCGGGGCAAGTGATCGGCAACCAGATAATAGTGGATGTGGGCGGCGTCGGGCGGCGGCTCGTCGGGCCGCACGTCATCACCATGCCGCGCGACACCAAGCATCTCACGCACAAACACCATGCGCAGAGGCATCATACTACGAGTGGTGACGTGAAAGAGCTAGGAGGATTAGTGCTCTCAGCAGGTAGAGGGAACACCGGCCTTATCAAATACGAGATATCCATCCCTCCGTCCAATACCGGGGTGCAAGTACAACAGCTCGATTGA
Protein Sequence
MCMPTPNNVSGFGGYSWFTSSADLTKNEVDTPSSLSYTLGSNVSPETTLTVMSHKTPQVQEKVGTVSVAVSNTGAQVTRVVTTGTPVTARRAMFVLNETPHTINRVTQQNQTATIHTTNLASKPFMTPLGPIQLTAEECNEILMKRALQAQGIATPVIDASQLNHTILNGSLKSLTDGNTQQQTQQQETIQTTTVQHHLLHTKQEPGTTNNSPKTVYSQTELLSTNSVMTSAQAPATVKERPYSCDECGKSFLLKHHLTTHARVHTGERPHVCAHCGKAFARKHCLNTHMLLHSAERPYKCHECKMAFTLKHHLVTHSRVHSRDRPYVCQECGRSFPLNRHLVTHRKYHAGERPYVCNDCGESFAQKEHLVMHSRFHGSLSPFVCPDCGAAFARKFQLVNHGRVHGRVPHACPVCGKEFLQKRTLVAHMKIHTGEGVVACLDCGEAFKSKPDLTQHCKATRHCTYGPTTQTIQVEQQQTQQQQQQQQQQQQQQQQQQQTTVIKSDDFNIKPQIVQVQQQLQQMAQQQQQQQQQQQQATVIKSDDFKPQIVQVIGADGQIVSEKTTPAYACPECGSCFNTKEALSLHVRLHAGDRTCVTDLCALTAALQPGLVAAATAAHNANNQPAVILRNNIITTVILRNNAATPVILRNNVATTVKFRNNVETAVILWNNVATTVKLRNNVATTVILRDNVASVVGVDQHVQIISSSPSNAVHTQVIATNHHAAPRPKMHFCGECGKGFAAKHGLLAHQRRHPDGSCTLRTHVCDQCGKAFFQKNHLMLHQRQHMDLTRNNSQQQQQQQQQQQQQAQQQAAQQVAQQVAQQVVQQVQQQVQQVQVQHQQTSMEMEQDHQQPTHIQVVNRSGQVIGNQIIVDVGGVGRRLVGPHVITMPRDTKHLTHKHHAQRHHTTSGDVKELGGLVLSAGRGNTGLIKYEISIPPSNTGVQVQQLD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00697601;
90% Identity
-
80% Identity
-