Ptra021490.1
Basic Information
- Insect
- Philereme transversata
- Gene Symbol
- -
- Assembly
- GCA_963924445.1
- Location
- OZ004347.1:22165583-22170375[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.41 40 6.0 5.3 1 23 104 127 104 127 0.93 2 24 0.43 42 5.9 0.6 2 23 154 176 153 176 0.94 3 24 0.033 3.3 9.4 2.7 2 23 199 220 198 220 0.98 4 24 0.0054 0.53 11.9 0.0 1 22 224 245 224 247 0.89 5 24 0.13 13 7.6 1.6 1 14 252 265 252 275 0.88 6 24 0.38 37 6.1 1.7 1 23 465 488 465 488 0.93 7 24 2.8 2.7e+02 3.4 0.5 2 23 515 537 514 537 0.94 8 24 0.34 33 6.3 1.6 2 23 560 583 559 583 0.95 9 24 0.00011 0.011 17.3 0.2 1 23 587 609 587 609 0.97 10 24 0.0028 0.28 12.8 0.9 1 23 614 637 614 637 0.96 11 24 0.00049 0.048 15.2 4.9 1 23 643 666 643 666 0.97 12 24 0.00026 0.025 16.1 1.1 2 23 674 696 673 696 0.96 13 24 0.013 1.3 10.7 2.1 1 23 702 724 702 724 0.97 14 24 3.1e-05 0.0031 19.0 4.3 1 23 730 752 730 752 0.99 15 24 2.6 2.6e+02 3.5 2.3 1 14 758 771 758 774 0.79 16 24 0.068 6.7 8.5 1.9 1 23 877 900 877 900 0.94 17 24 0.94 93 4.9 0.0 2 23 927 949 926 949 0.95 18 24 0.0013 0.13 13.8 4.8 2 23 972 993 971 993 0.97 19 24 0.00093 0.092 14.3 0.1 1 23 997 1019 997 1019 0.96 20 24 0.0077 0.75 11.4 2.5 1 23 1024 1047 1024 1047 0.96 21 24 0.034 3.3 9.4 2.1 1 23 1054 1077 1054 1077 0.84 22 24 0.001 0.1 14.2 3.3 2 23 1085 1107 1084 1107 0.96 23 24 0.028 2.7 9.7 0.3 1 23 1112 1134 1112 1134 0.95 24 24 9.8e-06 0.00096 20.5 5.0 1 23 1140 1162 1140 1162 0.99
Sequence Information
- Coding Sequence
- ATGTTTGCTGAAAgTGTCCACATCAGAGACCACAAATCCATTAAAAAGGAACTAGACGTTTCGTGGGAAGTAACAATAGTTAAAGCTGAAAACATAGCAAGTGTTGGTGATAAatctaaaacacaaaaaataaagcCGAAGATAAAACTACCTCAAAAGCCAGAAGAGGTTTCGATTaaaagaacaaaaataaaaccatcTCCAGAAATTGCTGATACTTCGGAACTCGATAAACAACGCTATAATGTGCGGACGCTATTGCAATGTTCAAACGCCACGCCGATCCGAACGCATACCATCGCAAGTGGATACATCTGCTGTTTCTGCAAAGCACATTTTTCTAAAGCTGCAGACCTTAAAACGCACACCATACATGACCACGACGgtgaaacaaaaaacaaatttctGCAAGGAACAACTTTATTCTCCTTTATCGTTAAACTCGACATAACATCCCTGATTTGCACCATTTGTTGTAAGACCACAGATAGTCTGGAACAGCTTATTGATCATCTTAACAACATTCATTACAAAGGTCTTCACACAGACATTAAAAGTTACATAGCCTGTTTTAAACTTGAAGGGGAAGCGATGAAGTGTCACATTTGTTCGGCAGAATATAAAAGCTTCAAATTCCTGCTGGAGCATATGAACAAACATTCCACCAACTTCGTTTGCGATGAGTGCGGTGCGGGATTCATCAATCTTGGACAGCTTCGGTACCACTCTGATAATATACACATAGTGGGTGCATACAAATGTGGCACGTGTGATAAAGTGTTTCCATCATCGAAAAAGAAGTATTTCCACGAACGAGCTTCGCACTTTCAATCACCGAAAAAGAGGTTTACCAACGGGCTTGTACGAGATTTCGGAAgTGTTGTCATCAAAGACTACCAACACATAAAAACAGAAGTAAATGAATTGGAAGAAACACTATTGTATCCAAAAGTTGAAGATACACCAAACCCTGGCGATAACAAACCTACACAATCCAGAAAACGCAAAATGAAGACAAAACAAACTTTGAAATCAGACGAGATCACAGTTAAAAGAATAAAACCAGTATCAGCTGACGCTCCAGCAAACATGAGAGTAAAAATAAAACCTCCATTAAAACTTTCAGCGATTCACAGTATAAAGGTGAAACCTCCATCAGAATCCGCACCGATTCAAACAGTTGAGAGAAAATCTCAATCAGAGGCGTCAAATATTCAAGGAGTAAAGATCAGATCTCTATCAGAACCCTCGCCGTTCCAAGGAATGAAAATAAAACCGCCTTCAGATCATCCACCCGGCATGTTGGAGATAGAAAAACAACGATATAACATTCAAACgctattaaaatattcaaatgCCACTCCTATCCGAGCGCATTATGTCGGAAGTGGTTATATCTGCTGTTTTTGCAAATCACAGTTCCCCAAAGCTGCGGACCTCAAGACGCACACCATACAAGACCACGAcgacaaaattaaaaacaaattcaTGCAACGGACTCATATATCTTCTTTCATCGTTAAACTAGACATAACTTCACTTAGCTGCAATATTTGCTGTACGATTTCGAATTCTCTTGAACAGCTCATTGATCATCTGAACAGCATTCATCAGAAAGCGCTTCACACTGACATCAAAAATTACATTGCTTGTTTTAAACTCGATGGAGAAGCCATGAAGTGTCATATTTGTTCGGCAGAATACGAGTATAACAGCTTTAAATTATTACAGGAGCATATGAATAAACATAATGTGAATTTCGTTTGCGATGAGTGTGGAGCGGGTTTCATTAATCGAAGCAAGCTAAACACTCACTCTAGTACGCATAAATTGGGCTCGTATAAATGCGAGATATGTAGCAAATTATTCAAAACAGCGATAACCATGAAAGAACACGTTAGCAAAACACATTCGACTATTCCGGTGTACAGATGCCATAAATGTGAGGAAAGATTTAAAACTAATACATCCAAGAAAAACCACATGAGAGAAGTTCATGGAGTCGTATACGCGGCCTTGAAATGTGATGCATGCAATAGGACTTTCAAAAACAATGATGGTCTTAGGATCCACAAAAAAAGAGATCATTTGATGGAAAGGCGGTTTCAGTGCGAATTGTGTGACAGCAGATTCTTCACCGCACCCATGTTGAAGCATCATAAAGTGACGCACACTGGTCAGCGAGACTTCAAATGTGAAATGTGCTCTAAATCGTATTCGAGGAAGTGTGCGCTCAGAGAACACCTTCGCTCTCACACTAATGATCGTCGGTTTAAATGCACTTACTGTGATATGGCCTTTTTGCAAAAGTGCAGTCTGAAAGGTGTCGACATCAGAGACAACGAAATCCTAAAACAGAAACTAGATGCTTTAAGCGAAGTTACTATTAAAGTTGAAGACAAATCTAAAACCGTCGTTGCTAAGCTTAAAACACCTAAGGCCGGAAAGGAGCAAACGAAGAAAAAGGCAGCCCAAGATCGAGATACCTTCATTCAAATAACGGAACTGAAATTTTCTCCAGATGAATCTCCAGCGAAGGTAGAGCTTGATAAACACAGATATAACATTCGAACACTATTACAGTCTTCAAACGCGACTCCGATTCGAACTCATTACGTTGGAAGCGGATACATTTGCTGCTTTTGCAAAGCACATTTCGTTAAAGCTGGGGATCTCAAGGCGCACACCATAAATGACCATGACGATAAAACTAAAAGCAAATTCATGCAAAGTACTGCTTTATTTAATCTCACGGTGAAACTTGACATAACATCACTTAGATGCAACATGTGCAGCTCGGCCGCGGATACCCTGGAACAACTCATCGATCATCTCAACAGCGCTCACCAGAAAGGTCTCCATACCGATGTCAAAAGCCACATCGCATGTTTTAAATTCGACGGAGAAGCGTTGAAGTGCCACATTTGTTTTATAGATTTTAACAGCTTTAAACACCTCCAGGCACATATGAATAAACACTTCTCTAACTTCATTTGCGATGTGTGTGGAACTGGGTTTATCAATGGCAGTCAACTTCGGATTCATTCGGATACCCACAAGGAAGGTACACATAAATGCGGTATGTGTTCTAAAGTTTTCCAATCGTCGAACAAAATGAAAGCTCACGAACGACTGACACACTTAGCAGCTTCGAGAAAGTACAAATGCTTTCATTGCggtgaaaaattcaaaaataggAATATCAAAAAGATTCACATGATCGAGGCACATGGAGTCGAATATGCGGACTTAAAATGTAATGCTTGCGATAAGACGTTTAAAAGTTCAAAGGCCCTGCACGATCACAAGAAAAGAGATCACTTGATGCGAAGATTTCCGTGTGGACTATGTGATAGTGTTTTTTATAGAATGGACAGGTTAAAACGACATGAAGTATCACATACAGGGGCTCGAAACTTCAAATGCGAAGTTTGTTCTAAATCTTATACGAGGAAATGTAACCTTAAAGAACACTTGCGTTCTCACTCGGTCGATCGCCGACGATAG
- Protein Sequence
- MFAESVHIRDHKSIKKELDVSWEVTIVKAENIASVGDKSKTQKIKPKIKLPQKPEEVSIKRTKIKPSPEIADTSELDKQRYNVRTLLQCSNATPIRTHTIASGYICCFCKAHFSKAADLKTHTIHDHDGETKNKFLQGTTLFSFIVKLDITSLICTICCKTTDSLEQLIDHLNNIHYKGLHTDIKSYIACFKLEGEAMKCHICSAEYKSFKFLLEHMNKHSTNFVCDECGAGFINLGQLRYHSDNIHIVGAYKCGTCDKVFPSSKKKYFHERASHFQSPKKRFTNGLVRDFGSVVIKDYQHIKTEVNELEETLLYPKVEDTPNPGDNKPTQSRKRKMKTKQTLKSDEITVKRIKPVSADAPANMRVKIKPPLKLSAIHSIKVKPPSESAPIQTVERKSQSEASNIQGVKIRSLSEPSPFQGMKIKPPSDHPPGMLEIEKQRYNIQTLLKYSNATPIRAHYVGSGYICCFCKSQFPKAADLKTHTIQDHDDKIKNKFMQRTHISSFIVKLDITSLSCNICCTISNSLEQLIDHLNSIHQKALHTDIKNYIACFKLDGEAMKCHICSAEYEYNSFKLLQEHMNKHNVNFVCDECGAGFINRSKLNTHSSTHKLGSYKCEICSKLFKTAITMKEHVSKTHSTIPVYRCHKCEERFKTNTSKKNHMREVHGVVYAALKCDACNRTFKNNDGLRIHKKRDHLMERRFQCELCDSRFFTAPMLKHHKVTHTGQRDFKCEMCSKSYSRKCALREHLRSHTNDRRFKCTYCDMAFLQKCSLKGVDIRDNEILKQKLDALSEVTIKVEDKSKTVVAKLKTPKAGKEQTKKKAAQDRDTFIQITELKFSPDESPAKVELDKHRYNIRTLLQSSNATPIRTHYVGSGYICCFCKAHFVKAGDLKAHTINDHDDKTKSKFMQSTALFNLTVKLDITSLRCNMCSSAADTLEQLIDHLNSAHQKGLHTDVKSHIACFKFDGEALKCHICFIDFNSFKHLQAHMNKHFSNFICDVCGTGFINGSQLRIHSDTHKEGTHKCGMCSKVFQSSNKMKAHERLTHLAASRKYKCFHCGEKFKNRNIKKIHMIEAHGVEYADLKCNACDKTFKSSKALHDHKKRDHLMRRFPCGLCDSVFYRMDRLKRHEVSHTGARNFKCEVCSKSYTRKCNLKEHLRSHSVDRRR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -