Basic Information

Insect: Philereme transversata
Gene Symbol: -
Assembly: GCA_963924445.1
Location: OZ004341.1:16155496-16167475[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 6.3e-06 0.00062 21.1 1.3 2 23 174 195 173 195 0.97

2 11 0.00025 0.024 16.1 0.3 2 23 207 228 206 228 0.98

3 11 0.00066 0.065 14.8 2.0 3 23 237 257 235 257 0.93

4 11 0.0055 0.54 11.9 4.9 1 23 263 285 263 285 0.99

5 11 1.6e-06 0.00016 23.0 0.9 1 23 291 313 291 313 0.97

6 11 6.3e-06 0.00062 21.1 0.9 1 23 319 341 319 341 0.96

7 11 0.00049 0.048 15.2 0.2 1 23 347 369 347 369 0.97

8 11 1.3e-05 0.0013 20.1 2.8 1 23 375 397 375 397 0.98

9 11 0.00011 0.011 17.2 1.6 1 23 403 425 403 425 0.98

10 11 2e-06 0.00019 22.7 0.7 1 23 431 453 431 453 0.99

11 11 1.8e-05 0.0018 19.7 1.4 1 23 459 481 459 481 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	6.3e-06	0.00062	21.1	1.3	2	23	174	195	173	195	0.97
2	11	0.00025	0.024	16.1	0.3	2	23	207	228	206	228	0.98
3	11	0.00066	0.065	14.8	2.0	3	23	237	257	235	257	0.93
4	11	0.0055	0.54	11.9	4.9	1	23	263	285	263	285	0.99
5	11	1.6e-06	0.00016	23.0	0.9	1	23	291	313	291	313	0.97
6	11	6.3e-06	0.00062	21.1	0.9	1	23	319	341	319	341	0.96
7	11	0.00049	0.048	15.2	0.2	1	23	347	369	347	369	0.97
8	11	1.3e-05	0.0013	20.1	2.8	1	23	375	397	375	397	0.98
9	11	0.00011	0.011	17.2	1.6	1	23	403	425	403	425	0.98
10	11	2e-06	0.00019	22.7	0.7	1	23	431	453	431	453	0.99
11	11	1.8e-05	0.0018	19.7	1.4	1	23	459	481	459	481	0.97

Sequence Information

Coding Sequence: atgtcgAGCTTATTTCTTCGTAAAAACTTTCAAGACTGTTGCAGAACGTGCTTGAACGATCTATCAAATAAAATGCACGGTTTATTCGACGAAAGGGATGATTCTCCCAGTGCGGCCGAAATTCTGCCCTTGTTTACAAATATACTGGTCCAATCAGAAGACAGGCTTCCAAAAAACCTGTGCAGCAGCTGTTATAACTGTCTCATCCACTTTTACGACTTCAAGAAACTTGCTGAGAAAATAAACCTCCAACTTAACCAATACTATGATAATTTCATATCAACAGAAAAAACCATAGGTTCCACAGAAATTCCAATAAAAAATGAATTTgaaagtgatgatgatgatcttttCATAAATGAATTTGACTTTAAAGAAATTAAGGATGAAGATGATACAGAAGACAGTGTTGAGATGTGTAGCTTTGACATACTAGAAAGTTCTAGTCCCACTGAATATAATTTACGGActacaaaagaaataaaaacgcAAAAAAATAATTCCCAAACAGAGATATTAAAATGTGACGATTGCACAAAAACTTTCAAAGTCCAATCAACATATGAAAATCATCTCTTAACACATAAAAAAGAACAAAACAGTGATATTGAACCAGTTAAATGTGATATCTGTTCCGCTTCATTCAAGTCTGTGAACTCCCTCGCAGCACATAAACGGAAACATGTACCAAAAGGCAGAGTACTTGCTTGCCAGTATTGCGCTAAAATCTTCAAAAAGACCAGCCATTTAAAAAGGCACGAAGGCAGTCACGATATAAACCGTAAATACAAATGTTCATTGTGCTCAAAAACCTACCATTTAGAAAGTGGGTTGACGGAGCACATGCATAAACACAGTGGAATAAAGCCCCATCCATGCCCAATATGCCCAAAAGCTTTTGCCCATCTGTCTACATTAAACAATCATTTGAAGTTACATACAAGAGGCAAGGCTTATTTATGCCCAACTTGCGGGAAGGGTTTTGATTCGAATACGAATTTCACTCAGCATGTGAAGAGGCATCTTGGATTGAAAATGTTTGCTTGTAGCTTCTGTCCTGCGAAGTTTGTTAGTAAAGGAGGGCTGAATTCCCATGAGAACACCCATACAGGTGTGAGACGTTATATGTGTAAGCACTGCCCGGCCTCCTTCACAGCCCCTCACTCGCTCAAAAGACACTTGCTCACACATCTTGGGGTCAAGCCATTCAAGTGTGACTTGTGTCCTATGAAATTCACAACAGTAAAATACCTGAGAAACCACAACCGTGTCCACACGGGTGAAAAGCCGTACCGCTGTGACCTGTGTGAACGCGCCTTTACACAGAGCGGCGATCTATTGAAGCACAAGCGCATGCATTTAGGAGTCAACTTGTATAAATGTGACCAGTGTTCCCAAAGCTTCAGACTGAAGTCTCAGCTTCGCGACCACATCTCCGAACACTACGTCTCGGCGAAGGCCAAAGAATCCAAAGATATTTGTACTATACTTACAAGATAA
Protein Sequence: MSSLFLRKNFQDCCRTCLNDLSNKMHGLFDERDDSPSAAEILPLFTNILVQSEDRLPKNLCSSCYNCLIHFYDFKKLAEKINLQLNQYYDNFISTEKTIGSTEIPIKNEFESDDDDLFINEFDFKEIKDEDDTEDSVEMCSFDILESSSPTEYNLRTTKEIKTQKNNSQTEILKCDDCTKTFKVQSTYENHLLTHKKEQNSDIEPVKCDICSASFKSVNSLAAHKRKHVPKGRVLACQYCAKIFKKTSHLKRHEGSHDINRKYKCSLCSKTYHLESGLTEHMHKHSGIKPHPCPICPKAFAHLSTLNNHLKLHTRGKAYLCPTCGKGFDSNTNFTQHVKRHLGLKMFACSFCPAKFVSKGGLNSHENTHTGVRRYMCKHCPASFTAPHSLKRHLLTHLGVKPFKCDLCPMKFTTVKYLRNHNRVHTGEKPYRCDLCERAFTQSGDLLKHKRMHLGVNLYKCDQCSQSFRLKSQLRDHISEHYVSAKAKESKDICTILTR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01183163;
90% Identity: iTF_01183163;
80% Identity: -