Ptra021477.1
Basic Information
- Insect
- Philereme transversata
- Gene Symbol
- -
- Assembly
- GCA_963924445.1
- Location
- OZ004347.1:22029369-22034408[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 10 9.8e+02 1.6 0.1 2 23 86 108 85 108 0.83 2 27 0.04 3.9 9.2 4.1 2 23 129 151 128 151 0.95 3 27 0.0019 0.19 13.3 3.5 1 23 156 179 156 179 0.98 4 27 0.42 41 6.0 4.7 1 23 183 206 183 206 0.95 5 27 0.044 4.4 9.0 2.4 2 23 209 231 208 231 0.97 6 27 0.11 11 7.7 1.6 2 20 238 256 238 258 0.92 7 27 0.00091 0.089 14.4 4.2 1 23 308 331 308 331 0.97 8 27 0.0005 0.049 15.2 2.0 1 23 403 426 403 426 0.97 9 27 0.00039 0.038 15.5 1.4 1 23 431 454 431 454 0.90 10 27 2.7e-05 0.0027 19.1 0.4 1 23 459 482 459 482 0.94 11 27 0.018 1.8 10.3 1.8 1 23 487 510 487 510 0.96 12 27 0.0012 0.12 13.9 2.1 1 23 514 537 514 537 0.97 13 27 0.02 2 10.1 1.2 2 23 544 565 543 565 0.97 14 27 0.00022 0.022 16.3 1.3 1 23 571 593 571 593 0.96 15 27 3.2 3.1e+02 3.2 0.0 3 21 686 704 684 707 0.80 16 27 0.21 21 6.9 0.4 2 23 728 750 727 750 0.94 17 27 0.0082 0.8 11.4 8.7 1 23 755 778 755 778 0.97 18 27 0.018 1.8 10.3 4.3 1 23 783 806 783 806 0.93 19 27 0.14 14 7.4 2.6 2 23 809 831 808 831 0.92 20 27 0.017 1.7 10.4 1.5 1 23 914 937 914 937 0.97 21 27 0.014 1.4 10.6 0.2 2 23 1012 1034 1011 1034 0.92 22 27 5.2e-05 0.0051 18.3 0.3 3 23 1041 1062 1039 1062 0.95 23 27 0.00016 0.016 16.7 1.9 2 23 1067 1089 1066 1089 0.95 24 27 0.012 1.2 10.8 0.5 1 23 1094 1117 1094 1117 0.97 25 27 0.011 1.1 10.9 8.1 1 23 1121 1144 1121 1144 0.97 26 27 0.093 9.2 8.0 1.7 3 23 1152 1172 1151 1172 0.96 27 27 7.4e-05 0.0073 17.8 1.0 1 23 1178 1200 1178 1200 0.98
Sequence Information
- Coding Sequence
- ATGAAACCTGAAGGAATCACGAAATTCACTACGAATGAATGCAGGCGGAGAAACCTTCAAACATTAGTCAACAACACCTCAGTGATACCATTCAAATGGCGAGGCAAATATTTATGCTATTTCTGTGGaatagacaaaataaaataccacgatttgagagaacataCTAAAACCCATATTCCTTGCTCAACTACGGAGCGAGCTATGAAACTCATTAGATGCGGAAATGAAACTAAAGTAGACGTATCAGAAATTAGTTGCAATATTTGTTCAGAACAGTTCCTAAATATAGACGATTTGATACCACATTTGAAACTGAAACATAAGCTTTGGTATCGTGAAGATATGTCACTGACGCTCGTGGCATACCGACTAGCTGATTTGAAATGCCTCGTTTGCAGTGAGAGTTTCAAAATCTTCTGTAACCTTATTCGACATATGAATCACAGCCATCCTGATAATTGCTTTCAATGTGATATCTGCAGCCAAAAGTATAATAAAATGCGTGATTTATCACACCACATAAGAACTTATCACAAGAAAGATTATAGCTGTCCAAAATGTTCTCTGACGTTTTCGTGCTTCCAGAATCTTTTAAAGCATAAAACGAAAGAGCATTTGTCAAAATGTAATCTTTGCTTTCAAACCTTTTCATCATATGAGAAACGAGTGAGCCACATGAAGAAGGAACACACACTAGACGATGGAGGAGAGTGTGGCTTTTGTCATAAacagttttataataaatacagcTTCTTAGATCATGCTACAAAATGCAAAGTTTCTATTCCAAAAGTTGAAGAATCTACTGTCGTTGTCGATGACGAGAACAAGAATCAAAATGTAAAAGACCTCCGAACCAGTATTGCTAATATCCTAAACATGACCACTGCTATGCCCTTTAAGTTCTTTCATAACAAGTTTAAGTGTTTCTACTGTCCAAAGGATTTCACTTCATGCAATGACCTCAGACTACATACAACAACCGAACATCCGACATGCGAGACAACGTTTCGTGCTATGAAATTGCGCGGAAGATCTTATGGAATCAAAATCAAAGTGGACACTTCGTCTCTATACTGTAAAATATGCTTCGAAAGATTTAACGATTTCACCATATCAGTCGACCATTTAGAAACAGAACACAAGACCGTCCTTACAAGGCACGTTGGCATATTTCAACCTTTTAACCTCGTCCATGACAAGTTCTGTTGCCCATTCTGCGGCGAAGAATTCAGATATTTCAGTCTGCTACTGCAGCATGTTAATACGAATCACTCTGACAACCAATACATTTGCACATTCTGTGGCAAAAGCTTTAATTCTGATTCAAATCTACGCGGGCACAGCTCCTACTACCATTCGAGTGATAAGTTCAAATGTAGCGATTGCAATCAAGAATTCTCGACAAACAACGGTTTAAAAGTACACATGGGGAACGCGCACGGAAATAAAGTCTTTAACTGCCAGCAGTGCTCGGAAAAGTTTGTGTCTCAGTACCGTATGATGAGGCATACGCTGAAGGCTCATGACGGTGGCCATAAATGCTCATACTGCGGTATGGCGTTTATCAAATACTCTTTTATGATCAACCACGTTAGAAGACTGCATCTCAAAGAGAAGAATGTGCAATGTACTCTTTGCAACGAACGATTTTTTGACACGAATCGTCTTAAGATGCATATGGTGAGGCATGTAGGTGAGCGGTCCTTCCGATGCGACTACTGTGGAAAACGGTTTCTGAGGAAGAAAAACCTTAAAGGCCATGTGGCTTTACACCTTAAGAATGGCAATGAATCGCCCGCACCCCTGGTCGACCGAATAACGTCCGAGCGACGGAGGAAAAACTTGAAAACTATATTCGATAACACGACAATTCTACCTTTCAAATGGCGAGGGACGCACGTTTGTTTCTATTGCAAAACTCGAATTCACGATTACATAGAATTCAGAAAGCACACTAAATCGCACGGTGGTTGCAGCATTAAGAACCATTCTATGAAAAGAATTAAGGGGAACTGGATAGAGATTAACGTAGACATATCCGAAATCGCGTGCGAAATTTGCGAAGAGCAATTCAAAAGTTTAGAAGTAGTAGTGGAGCATTTGGTGAACGACCATGGTTTGTTCTACGACAAGAACGTTTATTGCGAAATCTTGGAGTACCGTTTGGCCGACCTGCGTTGCACACAGTGTGATCTACAGTTCGATGCATTCAAAAATCTCGTTTCTCACGGCAAAATTCAGCATTCACGTAACAGCTTTGTGTGCCACCATTGTGGACGCAAGTTCTGTAAGAAAAGGAGTATATCGAGCCACATGGATACCTACCACCGGTTCGGAGGTTACGTTTGCAAACAATGCGGATTAGAATGTAAAAGTCATAACGAATTGCGAAAACACAAAGCGAACACACACTTGACGCGATGCCACGTTTGCGGCAAGAAATTcttgtacataaaaaaactctTCAATCACGTAAAGCTTGAACATCCTAACGATGATAGTAAAACCTGTGGCTTCTGTATGAAAGAGTTTCATTCTGCGCTTGGGCTAAAACAGCACACTGCTAAATGTAAAGTGAGGGTGCTATCACAAAACGACACTGGCATATCGATTCCCGGGAACAAACACTCTGTGAACACGTCTAGAACACACGAACAAATAGTGCGGATCCGACAGAACATTGTATGCGTTCTTAACATGTCCACGGCGGTACCTTTCAAGTTTAGAGTCAAATTCTCCTGTTTTTACTGTTCTCTCAAGTTCGACGATTACGAAGTTCTCAAACAACATACTCAAACGGAACATCCCGTATGCGATATCAAAAGTAAATCTATGAAAAAATGTAAAGGGAAACGCACGTTTGTCAGAGTCGATATCGCGACGCTTGCTTGTAAGCTGTGCTCGGCTCCTATGCCAGACTTGGAGCAGTTTATTGAGCACGCCATCTCCGTCCACGATGCGGACTATGACAAAACCGTCAGCCTTGACACCTGTTTCGAGCCTTACCGGTTAGTCAAAGGCAACATTCCTTGTCTAGAGTGTCCCAAAGTGTTCCGTTACCTGAACACTATGCTCAGGCATTTCAATTTAGAGCACAGCAATAATAACGTGATATGTGACTACTGCGGCCGCGGTTTCCGAAGCACGACCAATTTAAAAATGCATCTTCAGAACGCACATACCGGTTCCTGCGAATGTAAGATTTGCAACGCCAAGTTCAAGAACCAATCTGTTTTGGTACGTCATATGGCAAAGAGTCACAATGAGAAAAGTTTTAAATGCGCAAATTGCTCAGAGATGTTCGAGTCGGCGTATCAAAGGCAGACGCACTTGATCAAAGTTCACGGGATAGGTCACAAATGCGAGCACTGTGGGAAGATGTTCACGAAGCACTCTTTCATGGACTCTCACGTGAGACGGACGCATTTGAAGGAGAAGAACGTGGCTTGCTCGGTCTGTAACGATAAGTTTTTCGATAATCACTTGCTGCGAATGCATATGGTGAAACATGATGGTGAGAGGAAGTTTAAGTGTGATTTGTGCGAAAAGGCGTTTCTTAGACAAAAGAATTTGCGGACACACATGGACGTtcacaaaaaatatggttttgtACAGTGA
- Protein Sequence
- MKPEGITKFTTNECRRRNLQTLVNNTSVIPFKWRGKYLCYFCGIDKIKYHDLREHTKTHIPCSTTERAMKLIRCGNETKVDVSEISCNICSEQFLNIDDLIPHLKLKHKLWYREDMSLTLVAYRLADLKCLVCSESFKIFCNLIRHMNHSHPDNCFQCDICSQKYNKMRDLSHHIRTYHKKDYSCPKCSLTFSCFQNLLKHKTKEHLSKCNLCFQTFSSYEKRVSHMKKEHTLDDGGECGFCHKQFYNKYSFLDHATKCKVSIPKVEESTVVVDDENKNQNVKDLRTSIANILNMTTAMPFKFFHNKFKCFYCPKDFTSCNDLRLHTTTEHPTCETTFRAMKLRGRSYGIKIKVDTSSLYCKICFERFNDFTISVDHLETEHKTVLTRHVGIFQPFNLVHDKFCCPFCGEEFRYFSLLLQHVNTNHSDNQYICTFCGKSFNSDSNLRGHSSYYHSSDKFKCSDCNQEFSTNNGLKVHMGNAHGNKVFNCQQCSEKFVSQYRMMRHTLKAHDGGHKCSYCGMAFIKYSFMINHVRRLHLKEKNVQCTLCNERFFDTNRLKMHMVRHVGERSFRCDYCGKRFLRKKNLKGHVALHLKNGNESPAPLVDRITSERRRKNLKTIFDNTTILPFKWRGTHVCFYCKTRIHDYIEFRKHTKSHGGCSIKNHSMKRIKGNWIEINVDISEIACEICEEQFKSLEVVVEHLVNDHGLFYDKNVYCEILEYRLADLRCTQCDLQFDAFKNLVSHGKIQHSRNSFVCHHCGRKFCKKRSISSHMDTYHRFGGYVCKQCGLECKSHNELRKHKANTHLTRCHVCGKKFLYIKKLFNHVKLEHPNDDSKTCGFCMKEFHSALGLKQHTAKCKVRVLSQNDTGISIPGNKHSVNTSRTHEQIVRIRQNIVCVLNMSTAVPFKFRVKFSCFYCSLKFDDYEVLKQHTQTEHPVCDIKSKSMKKCKGKRTFVRVDIATLACKLCSAPMPDLEQFIEHAISVHDADYDKTVSLDTCFEPYRLVKGNIPCLECPKVFRYLNTMLRHFNLEHSNNNVICDYCGRGFRSTTNLKMHLQNAHTGSCECKICNAKFKNQSVLVRHMAKSHNEKSFKCANCSEMFESAYQRQTHLIKVHGIGHKCEHCGKMFTKHSFMDSHVRRTHLKEKNVACSVCNDKFFDNHLLRMHMVKHDGERKFKCDLCEKAFLRQKNLRTHMDVHKKYGFVQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -