Ptra012767.1
Basic Information
- Insect
- Philereme transversata
- Gene Symbol
- ZIPIC
- Assembly
- GCA_963924445.1
- Location
- OZ004342.1:32099413-32136607[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.00072 0.071 14.7 1.6 1 23 250 272 250 272 0.98 2 20 0.0018 0.18 13.4 1.4 1 23 333 356 333 356 0.96 3 20 0.00014 0.013 16.9 0.1 3 21 395 413 393 414 0.93 4 20 0.13 13 7.5 0.2 3 23 427 447 426 447 0.96 5 20 0.0021 0.21 13.2 0.3 2 23 455 477 455 477 0.96 6 20 0.00011 0.011 17.2 0.7 2 23 501 522 500 522 0.97 7 20 1.5e-05 0.0014 20.0 0.7 1 23 528 550 528 550 0.99 8 20 8.7e-05 0.0086 17.6 1.3 1 19 556 574 556 576 0.98 9 20 0.27 26 6.6 1.2 1 23 658 680 658 680 0.95 10 20 0.27 26 6.6 1.2 1 23 713 735 713 735 0.95 11 20 0.27 26 6.6 1.2 1 23 839 861 839 861 0.95 12 20 0.00051 0.05 15.1 1.0 1 23 867 890 867 890 0.96 13 20 3.7 3.7e+02 3.0 0.1 1 23 894 916 894 916 0.88 14 20 0.008 0.79 11.4 0.6 1 23 921 943 921 943 0.98 15 20 0.096 9.4 8.0 0.3 3 23 948 969 947 969 0.96 16 20 0.25 25 6.7 0.0 1 22 996 1019 996 1022 0.89 17 20 9.9e-05 0.0097 17.4 0.2 3 23 1098 1118 1097 1118 0.99 18 20 3.2e-06 0.00031 22.1 1.1 1 23 1124 1146 1124 1146 0.98 19 20 4.7e-05 0.0046 18.4 0.1 1 23 1152 1174 1152 1174 0.93 20 20 0.00033 0.032 15.8 0.3 1 23 1180 1203 1180 1203 0.96
Sequence Information
- Coding Sequence
- ATGGAGCCGTTCATGGCTTGCCGAATATGCCTCAATACAGACGCAAAACTTTACAACATGGGCCGATATCACCTGACATCAACTTACCAAGATCTCTGTGGGAACAATTTTCAGAATTCGCAACTAGACCTGATGCTCCCTCATGTCTGCTCGTATTGTGCTGCGTTGTTAAACAAGTTCGCAGTCTTCAAGGAGAAGTGTGAACAAGCTAAACAAGTCATGGAGTTTCTGTTGTCAGAACATTTACAGCTAACGACAGAACACATAAGAAAATTAAACAAGATCGAAGCAAACATCGCTCACCcgtacaaaatacaaataatccAAAACTTAGACTCTGTTACCGATATAAAAGAAGAGAATAAATTTGAAATCGAAACCATCCAAAATAGCACCAGAAATTACATTGGGTACGAAACTGATCAGGATGGCACCAATGATTACACAGGATACAATATAACTGAAACCGCTCAACACGGCACCAACTATTACAACGAGTATGACAGCAAAGAGTTCCTCGATATTGAATATGCTGATATCAAAAATGATAGTGACGATGAACCTCTATCAAAAAAAGTTAAGAGTGCAAAGGAAAATACTAAAAATGATTTAACATGTGAAGGCAATGAAGTTGATATGTCAGTGAAATGGCAAAGCCCTGATTTTGAGCTGATATTACTGACAAAAAAGCAGCAATTGGAAGAGGTACTGGCACGGAAGCAGTCCTCAAATTATCTGAACTCGGTGTACAAGTGTGAATATTGTTATAAAGGGTTCATGACGGAGGTCACTTTTAACAATCATATGGTCCGACATGATGAGGCTAGCGGTCCTGAAGTATGCGACGTGTGCCAGTCGCGCTGGGAGGACGCGCGCGCACTGCGTGCGCACGTGCAGGTGTCGCATGCGCGCCGCTACGTGTGCCGTCTGTGCACGCACACCGACAAGTCACATCATAAGGCCAAGGAACACCTCAAGTGGCATAAAGGTTTCCTCTTCGCGTGTAAACTGTGCGGCGCGACCTTCTCCAAAAGCACCACCTACCTGACGCACACCCGACTACGGCACCCCTCCACGGCCGCGTGCGACGCCTGCGGGGACCGCTTCCTCGGACAGAACGGTCTCAACATGCACAAGAAGAAGGCGCATAGAAATATGGAAACGAGTATTCAGTATTTGGATTGCAACATGTGCGGTGCAAAGTTCAGGAACCAAGAGGCGTTGAAACGGCATCAGCTGTTAGCCGTCGAACAAACCTGTGATACTACATTAAGGGCGTGTGAACACTGCGGGGACAGTTTAGTGAACGAGGAGTCTCTGAAGGAGCACCTGGTGATGCACCAACGAGCTGACGCGATACGGACTTGCAGCGGATGTGCGCGAACGTTCGCGAATGAGCGTACGCTCGCAACGCACATGGCGCGCTCGCACGGCGCGGGGGTAGGGGCGGGCGCGGGGTCGGTTGCGGCGTCGCGTGCGCGCGATAACACCAAGCATCAAGTGTGCGAGATATGTGGATACACGTGTATTTCGCGAGCTTCCCTGGTCTACCACCAGAGGACGCACACGGGAGAGAAACCCTTCGAGTGTACCATCTGCCCGAAGAGATTCAGCGTCTACCAACGATTGCAGATTCACATCCGCACGCACACAGGAGAGCGTCCGTTCAAATGTTCTCAATGCCCAAAGGCGTTCAAACACAAAGCGGCGCTTAACAGACACGATAGGGTTTCTGAGAATGATACCATGGTGTTTTGTCGGATCTGTCAACACCAACTCAGAAAATTCTACAAATTCCGACAGAAGTGCCCCGGAGGTATACAGAAGCTAAAGAAGTTCCTCCTGTTCTTACTGAAGCGGTACAACCCCGAGTACGAGAGCGTGTTCGACATCGAGTACCTCACGACGCGCGACGCCAAGCTGGCGGAGTTCCACGCGCGCCGGCGCAGCGCGGAGTACACGCGCGCGCGGCACAGGTGCGACACGTGCTACAGAGCGTTCGAGTTGCCGAGTCTGCTGGACTACCATAACAAATGGCATGATCTGGGGTTCCACATCGAGTACCTCACGACGCGCGACGCCAAGCTGGCGGAGTTCCACGCGCGCCGGCGCAGCGCGGAGTACGCGCGCGCGCGGCACAGGTGCGACACGTGCTACAGAGCGTTCGAGTTGCCGAGTCTGCTGGACTACCATAACAAATGGCATGATTTAAGTATTGTCACTAGCTGGGGTTCCACATCGAGTACCTCACGACGCGCGACGCCAAGCTGGCGGAGTTCCACGCGCGCCGGCGCAGCGCGGAGTACGTGCGCGCGCGGCACAGCTGGGGTTCCACATCGAGTACCTCACGACGCGCGGCGCCAAGCTGGCGGAGCTCCACGCGCGCCGGCGCAGCGCGGAGTACGCGCGCGCGCGGCACAGCTGGGGTTCCACATCGAGTACCTCACGACGCGTGACGCCAAGCTGGCGGAGTTCCACGCGCGCCGGCGCAGCGCGGAGTACGCGCGCGCGCGGCACAGGTGCGACACGTGCTACAGAGCGTTCGAGTTGCCGAGTCTGCTGGACTACCATAACAAATGGCATGATACGAGTCGTCCGCACGCGTGCGACATCTGCGGCATGCGGTTCTCCGCGCGGAAGCAGCTGATGGTGCACAACCGCACCAGCCACTACTCCATCTACAGCTGCAAGCTGTGCCCTATCGTCACTAATGACCTGTACGTGATGGGAAATCATTACGAACAACACAAAGGCGTCAGGTACACGTGCGATGTCTGCCTCGGCGAGTACAGtAGTAGAAGCACGCTGCGATCTCATCGCCTGTCTCACTCGGGGGTCGCGTGCTCGCTCTGCGCGCGCCGCTTCGTCTCCGCGCTCGGGTATACTAACCACATGAAGCTTAAACATCCCGGCGCGGTATCAACTGAGTCGCAAGAAAGCGACACGCGGCGCAAACAAACACTAATGCAACAGAAAAAGTATATCTACAAATGCGTATACCCTGGTTGCGTAGAGCGCTTCTCGTCTGCCGGCGCGCTGCGTGGGCACGCGCTAACAGCCGGCCACGCGCGGCGTCACGCGCCCGAGCGGCGTAGCGTGCGCACGCGCGCCGCGTCGACAAGCGCGAGGGCCGGGGGGAACGAGGCAACCGTCTGTGAGGGAACTAATACGTACAGTATTTGTCCTATAtgTTGTGAGAAGGTGTTGATAAAGGGTACGCTATCGTTGTACAAGCACTACTCGGCGGCGCATCCCGCAGTGCCGTACCGCCCGCACGCGCGTCACATGCTCTGCGAACTATGCGGGAAGGAATATGTCTCGCAAGCGAAGCTTCTTATCCACCAGCGCACGCACACCGGCGAGCGCCCCTTCCAGTGCAACCTGTGCCCCAAGACATACACCACATCGGTCTTTTTACAGAATCACATGCGCGCGCACACGGGGGAGCGTCCCTTCCCCTGCCCCACGTGCCCCAAGGCCTTCAGCGATAAGGGCGCCCTCGTGCGGCATGATCGGGTGCACACGGGTGAGAAGCCGTACGCGTGTCCGATGTGCGCGAAGACCTTTACTCAGTCCAACTCCATGAAGCTGCATGTCACTACTGTCCACCTCAAGCAGCCCACCCCCTACAAAAGCAAGGACCGGAAACAAACAGAACAATCACATCTTACTAATACTGATAAAGTGCCAGACCATGGTTGTTTAAAAGTGTAG
- Protein Sequence
- MEPFMACRICLNTDAKLYNMGRYHLTSTYQDLCGNNFQNSQLDLMLPHVCSYCAALLNKFAVFKEKCEQAKQVMEFLLSEHLQLTTEHIRKLNKIEANIAHPYKIQIIQNLDSVTDIKEENKFEIETIQNSTRNYIGYETDQDGTNDYTGYNITETAQHGTNYYNEYDSKEFLDIEYADIKNDSDDEPLSKKVKSAKENTKNDLTCEGNEVDMSVKWQSPDFELILLTKKQQLEEVLARKQSSNYLNSVYKCEYCYKGFMTEVTFNNHMVRHDEASGPEVCDVCQSRWEDARALRAHVQVSHARRYVCRLCTHTDKSHHKAKEHLKWHKGFLFACKLCGATFSKSTTYLTHTRLRHPSTAACDACGDRFLGQNGLNMHKKKAHRNMETSIQYLDCNMCGAKFRNQEALKRHQLLAVEQTCDTTLRACEHCGDSLVNEESLKEHLVMHQRADAIRTCSGCARTFANERTLATHMARSHGAGVGAGAGSVAASRARDNTKHQVCEICGYTCISRASLVYHQRTHTGEKPFECTICPKRFSVYQRLQIHIRTHTGERPFKCSQCPKAFKHKAALNRHDRVSENDTMVFCRICQHQLRKFYKFRQKCPGGIQKLKKFLLFLLKRYNPEYESVFDIEYLTTRDAKLAEFHARRRSAEYTRARHRCDTCYRAFELPSLLDYHNKWHDLGFHIEYLTTRDAKLAEFHARRRSAEYARARHRCDTCYRAFELPSLLDYHNKWHDLSIVTSWGSTSSTSRRATPSWRSSTRAGAARSTCARGTAGVPHRVPHDARRQAGGAPRAPAQRGVRARAAQLGFHIEYLTTRDAKLAEFHARRRSAEYARARHRCDTCYRAFELPSLLDYHNKWHDTSRPHACDICGMRFSARKQLMVHNRTSHYSIYSCKLCPIVTNDLYVMGNHYEQHKGVRYTCDVCLGEYSSRSTLRSHRLSHSGVACSLCARRFVSALGYTNHMKLKHPGAVSTESQESDTRRKQTLMQQKKYIYKCVYPGCVERFSSAGALRGHALTAGHARRHAPERRSVRTRAASTSARAGGNEATVCEGTNTYSICPICCEKVLIKGTLSLYKHYSAAHPAVPYRPHARHMLCELCGKEYVSQAKLLIHQRTHTGERPFQCNLCPKTYTTSVFLQNHMRAHTGERPFPCPTCPKAFSDKGALVRHDRVHTGEKPYACPMCAKTFTQSNSMKLHVTTVHLKQPTPYKSKDRKQTEQSHLTNTDKVPDHGCLKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -