Ptra020399.1
Basic Information
- Insect
- Philereme transversata
- Gene Symbol
- -
- Assembly
- GCA_963924445.1
- Location
- OZ004347.1:1254092-1256906[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.66 65 5.3 0.0 2 20 76 94 75 96 0.92 2 17 9.3e-06 0.00092 20.6 2.3 2 23 121 142 121 142 0.97 3 17 0.0002 0.02 16.4 0.6 5 23 153 172 151 172 0.95 4 17 0.0011 0.11 14.1 2.1 1 23 178 200 178 200 0.91 5 17 0.017 1.7 10.4 2.9 1 23 206 228 206 228 0.98 6 17 0.00077 0.076 14.6 0.7 1 20 233 252 233 254 0.94 7 17 0.0014 0.13 13.8 0.3 1 23 422 444 422 444 0.98 8 17 0.0037 0.36 12.4 0.5 1 23 450 473 450 473 0.95 9 17 5.7e-05 0.0056 18.1 0.4 3 23 481 501 480 501 0.98 10 17 2.3e-07 2.3e-05 25.7 2.5 1 23 507 529 507 529 0.98 11 17 0.002 0.2 13.3 0.0 1 23 535 557 535 557 0.97 12 17 1.9 1.9e+02 3.9 0.0 6 20 567 581 566 584 0.94 13 17 0.036 3.5 9.3 0.3 3 21 628 646 628 649 0.93 14 17 1.3e-06 0.00012 23.4 2.6 1 23 657 679 657 679 0.96 15 17 0.0056 0.55 11.9 0.4 3 23 690 710 689 710 0.98 16 17 0.042 4.2 9.1 0.0 6 23 720 737 719 737 0.97 17 17 0.0067 0.66 11.6 0.1 6 23 747 764 746 764 0.99
Sequence Information
- Coding Sequence
- ATGGAGCTCGTCTGCCTAAAATGCGATATCAAGACTTCAGACGAACAATTTATCCAGCATTTAGAATCAAGACATGCGGATATAAAAAACCAAGACGATGTTGAGGCATTTGTGAGAGACCACGTGACATTCGAAGAGGTAATTTTGTCTGAATCTGATCACGATACGTTAGAAATGTCTGTAGCATCGACTGAACATTTTACAGAAGAAGATACATCAGGCGTAGAATGCGAGAGATGCGGCTATTCCGCGGTAGACCCGGCTGCCATGACTGCACATACTCTCGAATGCCGTTATACGATATCCGATGTAAATAGAGTCACGGAAACAGAGGAGACGAACCAAAAACGAATCCCGGCCGTGTGCCCCGACTGTAACCGCACATTTTCCAACAAATACAACATGTTGCACCATTGGAAAAGCCACGATAACACCGAGAAAGTAAAGTTCAGTTGCGAGTGCGGGAAGAGTTATACAACTCGCGGGAATCTAGAAGCGCACAAGCGGAATACGCACGCTAGGGTTCTTCCGCACAAATGCACAGACTGCGGGAAAGGTTTTACATCTCGCTCCGACCGCGACACGCACTCTCTTTTGCACACCGGCGCCCGTCCTTTCTCTTGCACGGTTTGCTCGCGTTCGTTTCGCGCTAAGAAGTACCGAGATAAACATCAGGAGACGCACTCGCCGCGGAAATTTGAATGTGAGCTATGCAGCAGGAGGTTCGTGCGGCGAGCGCATCTGCGGTACCACGAAAACGAAAAAACCTTCCTCACGCGTTCCGATCATAAAAAGACGATATCTATCGCGTTTCGCTCGCACCCCTCTCCGTTGACTTTCGAGCGACGTCGAACTCCGTCGCGCGAAAATCAAGCGTCAAGACAACCCACTGCGTCAAGACAAACCACTTTGCGTAGGTCCGCGGAGTCGCCGGCGCCGTCCGCCGAGGTACAGGGCTTCCTCGACGAGGCGTATGACGACGAGTCGGACACGGCCCCGCTCGCTGAGCTGGTCTCCGCCGACCCCCTCGCCGCTCTGCGTCAAGCCCTCCGTGATCTGCGGGACCACTACCGCGAGCGACACCTCCGCGCACGACGGTCGCCCAGCACCAGCGAGGAGGAGCGCCGGCCCGAGGAGGGGGAGGTCGGTCCCGTCGGCTTCGACGATCTCACGCACCGCAACAAGCGCCGCGACAGGTTCGACTCGGCGACGCGCGCGACGCTCGACGCGGCACGCGGCCGCGGTGAGGGGGGGCGGCCGCACTACACCTGCCCCGTCTGCTCCAGACGCCTCGCCTCCCCGCACGCCTTCCTGCAGCACGCTCGGATACACTCCGGGGAGCGCGCGCACATCTGCCACGCGTGCGGAGCAGCCTTCCGCGCGCGCGGGGGACTGCAGCGGCACGTGCGGGAGACGCACGAGCGCCGTCGCCGTCGCGCCTGCGATCTCTGTGCGAGGACCTTCGCGAACGAGCAGAACCTGCGCCAGCATCTCCGCACGCACACCGGCGAGCGGCCGCACCAGTGCCCCGAGTGCGGGAAGCGGTTCGCGCAAAGCGGATCGCTGCACGCGCACCGACGCACGCACGCATCGCGCCGCGCCTTCTCCTGCGCCGAGTGCGGTGCCGCCTTCCGCTTGCGCGCTGGCCTCGCGCGCCACGCGCTCCGCCACTCCGGGGAGCGCCCGCACCGCTGCGCCTGCGGCCGCGCCTTCGCCGCGAGGCACGAGCTGGCGGCGCATCTGCCGCTGCACGGAGACCTAGCGCCCCACGCGTGCGCGATCTGCGGCGTGGCCTACAAGGACGACGTCGACGTAGAGGCCGCGCGCGCGAGTGCCGAGACGCGGAGCTCGCCGGCGAAGAGGGCGCGGAAGCGGCGCGGGTGCGCGTCGTGCGGGCGCGTGCTGTCGGACGCGGCGAACCTCGCGCGGCACGCGCGCTGCGTGCACGGGGCACCCGCGGCGCGGCCGCACGCGTGCCGCGAGTGCGGGCGCGCCTTCACCCGCGCGGAGCACCTGCGCTCGCACATGCGGCTGCACGCGGCCCCGGAGGCGGCGCCGGCGCTGCTGTGCGAGTCGTGCGGCGCCACGTGCGCCTCGCCCGCGGCGCTGCGCTCGCACCGTCGCCTGCACAGGGAGGCGACTCTGCACGCGTGCGCGTGTGGCGCGCGGTTCCGTCGCGCGGGCGCCCTGCGCGCGCACGCCTCGGTGCACACGGGCGCGCGTCCCTACGCCTGCGCGTGCGGGCGTGCCTTCCGCCTGCGCGCGCAGCTCACAGCGCACGAGCGGAGACACGTAGCGAACGACGTCCCGGACAGTTACTCCATTCGCACCCTGCACTTCGTGGACCTGATGGACTCATCTGACGACGAGGAGACGGCGAGCCCCGAGCCCCCGtccccgccgccgccgccgccccgcTACCCTGCCGACTCCGCGGGACATGAAACTGGGTTAAGACATTATGTATGGACAGATTGA
- Protein Sequence
- MELVCLKCDIKTSDEQFIQHLESRHADIKNQDDVEAFVRDHVTFEEVILSESDHDTLEMSVASTEHFTEEDTSGVECERCGYSAVDPAAMTAHTLECRYTISDVNRVTETEETNQKRIPAVCPDCNRTFSNKYNMLHHWKSHDNTEKVKFSCECGKSYTTRGNLEAHKRNTHARVLPHKCTDCGKGFTSRSDRDTHSLLHTGARPFSCTVCSRSFRAKKYRDKHQETHSPRKFECELCSRRFVRRAHLRYHENEKTFLTRSDHKKTISIAFRSHPSPLTFERRRTPSRENQASRQPTASRQTTLRRSAESPAPSAEVQGFLDEAYDDESDTAPLAELVSADPLAALRQALRDLRDHYRERHLRARRSPSTSEEERRPEEGEVGPVGFDDLTHRNKRRDRFDSATRATLDAARGRGEGGRPHYTCPVCSRRLASPHAFLQHARIHSGERAHICHACGAAFRARGGLQRHVRETHERRRRRACDLCARTFANEQNLRQHLRTHTGERPHQCPECGKRFAQSGSLHAHRRTHASRRAFSCAECGAAFRLRAGLARHALRHSGERPHRCACGRAFAARHELAAHLPLHGDLAPHACAICGVAYKDDVDVEAARASAETRSSPAKRARKRRGCASCGRVLSDAANLARHARCVHGAPAARPHACRECGRAFTRAEHLRSHMRLHAAPEAAPALLCESCGATCASPAALRSHRRLHREATLHACACGARFRRAGALRAHASVHTGARPYACACGRAFRLRAQLTAHERRHVANDVPDSYSIRTLHFVDLMDSSDDEETASPEPPSPPPPPPRYPADSAGHETGLRHYVWTD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -