Ptra021915.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Philereme transversata
Gene Symbol
-
Assembly
GCA_963924445.1
Location
OZ004347.1:27101496-27106190[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 26 0.049 4.8 8.9 0.1 1 20 120 139 120 141 0.93
2 26 0.011 1 11.0 0.2 1 23 171 193 171 193 0.97
3 26 0.11 11 7.8 0.9 3 23 199 220 198 220 0.93
4 26 0.24 24 6.7 2.8 3 21 225 243 223 244 0.93
5 26 0.021 2.1 10.1 0.3 1 23 253 276 253 276 0.93
6 26 1.1e-05 0.0011 20.4 2.5 1 23 282 304 282 304 0.98
7 26 0.0052 0.51 12.0 1.1 1 23 311 335 311 335 0.96
8 26 0.00027 0.027 16.0 1.2 1 21 347 367 347 371 0.91
9 26 0.00013 0.013 17.0 0.4 2 21 481 500 480 501 0.94
10 26 0.43 42 6.0 0.5 3 23 534 555 532 555 0.96
11 26 0.004 0.39 12.3 1.5 1 23 560 582 560 582 0.97
12 26 0.039 3.9 9.2 2.7 1 20 585 604 585 606 0.93
13 26 0.002 0.19 13.3 0.4 1 23 618 641 618 641 0.93
14 26 0.00012 0.012 17.1 1.9 1 23 647 669 647 669 0.98
15 26 0.0097 0.95 11.1 1.6 1 23 703 726 703 726 0.96
16 26 0.0018 0.17 13.4 0.1 3 23 736 757 735 757 0.96
17 26 0.00028 0.027 16.0 1.3 2 21 868 887 868 888 0.94
18 26 4.8 4.7e+02 2.6 0.0 3 23 895 916 893 916 0.92
19 26 0.79 78 5.1 1.2 1 23 921 944 921 944 0.94
20 26 0.00025 0.025 16.1 0.6 2 23 950 971 949 971 0.96
21 26 0.094 9.2 8.0 3.0 2 21 975 994 974 995 0.92
22 26 9.4e-05 0.0092 17.5 0.4 1 23 1021 1044 1021 1044 0.95
23 26 0.0021 0.21 13.2 1.4 1 23 1050 1072 1050 1072 0.93
24 26 0.0057 0.56 11.8 0.1 1 23 1078 1100 1078 1100 0.98
25 26 0.016 1.5 10.5 0.1 1 23 1106 1129 1106 1129 0.94
26 26 3.2e-05 0.0031 18.9 0.2 1 23 1135 1158 1135 1158 0.97

Sequence Information

Coding Sequence
ATGGCGGATACGCGTGAGATGCCCCATCAAATATGCCATCACTGTATGTCCCACGTCACAACCTTTCTGTCATTTCTAAAACTGTGCAAAGCATCAGAAGCACAGTGGAACTATCTATCCGAACGATTAATCGATATCTCGATTGAAACTAAAGCTACAACAGCCTATATCTTTGTCAAAGATAACAGAGTTCGAACCGAAGTAGAACGCAGAGATAGAGATAAAAATCTAGACATGAAAAACGTAAAAAACCGCTTAAATCGTCTTAAAATAGAAACGACAAAGGAGTACCAAACGTTCAAAAAACCTGTGCCTATAGAAGAACTTGAGAGGGTCAGACAATGGAAGGCAAAACTCTATACATGCCCAGAGTGCGGGTCGAtgtataaaaagttgtctaagaTCAATCTTCACCTAGCAAATCAAGGCAAAAGACTATGCGGACACTGTTACAAGATTGTGAACTTAAAAACGTTTGGGGAACACTTAGAAACGCATATGATTTCTTTCTTCCCATGTAAGGTTTGCTCGTTACCTTTTGAACTCGAAGAGCAGTTAGAAAAACACGTACATGTTCATAAAGGCAAAAATATGTGCGGAGAATGCAAAAGAACGTTTCCAACAGCAGATATACTAACTTTACACGTCCATAGAAAGCACCAGGCAGATTTCTGTAGCAACTGCCAGACAAGGTTCTCAAGTCGCATCTGCTTGTACAAGCACAGGATTAAATGTAGATCGAAACCCCAGAAAAGCTATATCTGCGATTATTGCTCTAAAGAATTTAACGAAAGAAGCGTGATCAAATCTCACATAACACTGATCCACTCAAAGAAATTGATGCACCAATGTGAACGGTGCGGAAAGATATTCAACAGTGCCTCCCATTTGGAGGAGCACTATGAAACACACGATGTAATAGCGGATAGATATGTATGCCAGTATTGTGAAAACAGAATATACAGTACATCAGGGGGGTTCCGGAGGCATATGAGATTGAAACATTACAGAGCAAATCCAGAGCTGAAGAAAGCAAAGTTCTCGTGTGAAGTGTGCAAAACAAGCTTCATCAGCCTAAAGAATTTGAATAATCATCTAAAAGCAAAGAAACATAAAGATAAAGATCTTAGAAATGAATTGGTTGAGGAAGACACCATCCTACCGCCGGGCCTCTGCTGCGATTGCGCAGAGGACGTCGTAACCGCCGCCAAGTTCAAACTTCTGTGTGACATTTCCGCTCACCGATGGAGCGACGCTACCACATATCTATCGAAAATAAACCTCGAGAGCAGAGATAAAACACTATTCTTCGTGTGCGATGACAACGAGACGATTATAAGTCAGAAAAGAGTTGACACTGTAGTCTCCGCAGTGAGAACTCTTAGATACTTAAAAATAGCCCATAAACTGAAAAAACCTAAGCGAAAAGCGGTCGCTTGCATCTGTCCGTATTGCGACAAACCATTCCCCAGTTTCGATCTCCTCAATGATCATATGAAGAATGGTCAGAAACGAGTCTGCTGCGAATGTGGACTTGTCATGAGTAAAACTGAGTTGTCAGATCATTTGTTCGAGGCTCACCACATAGAAACTGTGCACTGCAAAATTTGCTACGCTCTATTTAATAGTTATGGAGAAGCAAACTGGCATATGATGCGATACCACGGCCCTAAATCCTTCACTTGTAAAAACTGCGGGCGTGGATATCAAAACGAAAGGGGGCTAAGATCTCATTACTACTCACACTCTCTCTTCAGCTGTGTGTCCTGCGGTCGTAGCTTCGATAACAACGGATGCTACAGACACCATAGGGGCACTTGCAAAGCGAAACACAACACAGAGTTCGGTATTTACGAATGCAACGATTGCGAGCAACAGTACGATAAAAAAGCTTCCCTAAAAGTACATATAGTCCAAAAACACTTGAACGTGCTGCCCTTCGTTTGCCAAACTTGCGGTAAAAGGACATCGACGCTCGGTCACCTGCGATCACACGAGAAAATCCACGATAAAGATAGAAAAATGCTGGTGTGTCATTGCGGAGCGAAATTCCGCACAGTGTTGGGACATCGTCTACATATGAGGATACACAGTGGCTTGAAGCCTTTCAAATGTACGCAATGCGATGAGTCCTTTATATCGGCGTCCAGGCGTCTGGATCATACCAAAAGGCGACATAAAAGTACGAAGGATTTGGCCCACGGATGCGATCAGTGTCCCGCTCGGTTCATCAGGCCTTGGGAACTGAAGAAGCATTACATGAACAGCCACAGCGCGGTGATAAAAGAGGAGAGCATGTGTCCGTGTGGCGTGTGCGTCTCGTGCGCGAGCGCCGCGCTCGCCGCGCAAGAGTTCCGCCTGCTCGTGCGCACCGCGCAGCGGAACTGGCTGCGCGCAATCACCGCCCTGCAGCACGTGCCAGATGAATACACAGAGAAAGCCAAGTCCATTTGCGCCTTCATCACCCAGGACGAAGTCTCCGTGGAGATCTACAAGGACTTCACCGGCGGAGAGCCGGGCGCAGTCGTCAATCGCACCAAAACGAAGATAACGAAAAAACAAGTCCGGAAACCGAGGGTGATTCGCAACGGCCCGCTGGCCTCCTGCCCGGATTGCCACAAGTGCTTCGGCAGCCCTTACCTCCTTCAGTTGCATCTGCAGAACAGCGATCAGAAGGACGCTTGCCTGATATGCGGAATGGTTCTCCCAAGAGGCGCTCCGCTGAGAGACCATGTGGAGATCGTCCACAAAGAAACAGCCTTTTTGTGCAAAGACTGTCTAACGGTGCACAGTTCGGAAGCTGAACTAAAGAAACACGAGAAAAAAGCGCACAAACCCGGCGCGCTGACCTGCAACGCCTGCGGAAGAACGTTCACGCGGACGTCTTCTTACGACACCCACATCCAAATACACGGTTTTCTCACCTGTCGAAGTTGCGGAACCCAGTTCACAAACAGGAGTTGCTACAGGGAACACAGGTCGACTTGCGAGCCGTCTGCCAAACCAGCTCCCAAAACGGTACCCCGAAATCGACGATCCAACAACCGTGATCCGGGCCAGTACATCTGCGATTACTGCGAGAAGAAATACAACTCCAGGCCTCAGCTCAAGAACCATATCTTATGGATCCATTTGGACCACAGACCTCATCAGTGCTCGTGGTGCGGGAAGAGATTCTTCACATCAGCGAGGTTGACGGAACATTCTGTAGTCCATACCCGCGTTAGGAACTTTGAGTGTGACATCTGTGGTGCTAAGTTGGTGACAAAAAGTGCTGCGATCTACCACAGGAGACGGCATACGGGGGAGAAGCCTTACGTGTGTGATGATTGTGGGGCTGCGTTTATCTCTTCCTCACGAAGGTTGGAACATGCCAAGAGGAAACACAATAAAGGGGTTAGGTTTCAGTGTGTGGAGTGTCCAGCTAGCTTTGTAAGAAGAAAGGAACTTGAAAAACATATTGAAAAGAATCATAAAGATGTTCCAATGGCTGTTTTAAAGATTGAAAAGGCGGATTGA
Protein Sequence
MADTREMPHQICHHCMSHVTTFLSFLKLCKASEAQWNYLSERLIDISIETKATTAYIFVKDNRVRTEVERRDRDKNLDMKNVKNRLNRLKIETTKEYQTFKKPVPIEELERVRQWKAKLYTCPECGSMYKKLSKINLHLANQGKRLCGHCYKIVNLKTFGEHLETHMISFFPCKVCSLPFELEEQLEKHVHVHKGKNMCGECKRTFPTADILTLHVHRKHQADFCSNCQTRFSSRICLYKHRIKCRSKPQKSYICDYCSKEFNERSVIKSHITLIHSKKLMHQCERCGKIFNSASHLEEHYETHDVIADRYVCQYCENRIYSTSGGFRRHMRLKHYRANPELKKAKFSCEVCKTSFISLKNLNNHLKAKKHKDKDLRNELVEEDTILPPGLCCDCAEDVVTAAKFKLLCDISAHRWSDATTYLSKINLESRDKTLFFVCDDNETIISQKRVDTVVSAVRTLRYLKIAHKLKKPKRKAVACICPYCDKPFPSFDLLNDHMKNGQKRVCCECGLVMSKTELSDHLFEAHHIETVHCKICYALFNSYGEANWHMMRYHGPKSFTCKNCGRGYQNERGLRSHYYSHSLFSCVSCGRSFDNNGCYRHHRGTCKAKHNTEFGIYECNDCEQQYDKKASLKVHIVQKHLNVLPFVCQTCGKRTSTLGHLRSHEKIHDKDRKMLVCHCGAKFRTVLGHRLHMRIHSGLKPFKCTQCDESFISASRRLDHTKRRHKSTKDLAHGCDQCPARFIRPWELKKHYMNSHSAVIKEESMCPCGVCVSCASAALAAQEFRLLVRTAQRNWLRAITALQHVPDEYTEKAKSICAFITQDEVSVEIYKDFTGGEPGAVVNRTKTKITKKQVRKPRVIRNGPLASCPDCHKCFGSPYLLQLHLQNSDQKDACLICGMVLPRGAPLRDHVEIVHKETAFLCKDCLTVHSSEAELKKHEKKAHKPGALTCNACGRTFTRTSSYDTHIQIHGFLTCRSCGTQFTNRSCYREHRSTCEPSAKPAPKTVPRNRRSNNRDPGQYICDYCEKKYNSRPQLKNHILWIHLDHRPHQCSWCGKRFFTSARLTEHSVVHTRVRNFECDICGAKLVTKSAAIYHRRRHTGEKPYVCDDCGAAFISSSRRLEHAKRKHNKGVRFQCVECPASFVRRKELEKHIEKNHKDVPMAVLKIEKAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-