Ptra012343.1
Basic Information
- Insect
- Philereme transversata
- Gene Symbol
- Zbtb41
- Assembly
- GCA_963924445.1
- Location
- OZ004342.1:26534956-26540112[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 3.8e-05 0.0037 18.7 5.0 2 23 146 167 146 167 0.97 2 14 1.1e-06 0.00011 23.6 2.4 1 22 173 194 173 194 0.97 3 14 0.00048 0.047 15.2 5.5 1 23 212 234 212 234 0.97 4 14 7.4e-07 7.3e-05 24.1 1.7 1 21 240 260 240 261 0.96 5 14 0.13 13 7.6 0.5 1 23 272 294 272 294 0.95 6 14 1.8e-06 0.00018 22.8 1.7 1 21 300 320 300 321 0.96 7 14 1.3e-05 0.0013 20.2 1.3 3 23 331 352 329 352 0.95 8 14 0.00044 0.043 15.4 4.7 1 23 358 380 358 380 0.98 9 14 4.6e-06 0.00045 21.6 1.3 1 23 386 408 386 408 0.97 10 14 0.00085 0.083 14.4 0.8 1 21 414 434 414 436 0.94 11 14 9.7e-06 0.00095 20.6 3.0 1 23 442 465 442 465 0.97 12 14 1.1e-05 0.0011 20.4 2.3 1 23 471 493 471 493 0.98 13 14 2.8e-05 0.0028 19.1 1.4 1 23 499 521 499 521 0.97 14 14 0.0029 0.29 12.7 0.0 6 21 531 546 530 547 0.96
Sequence Information
- Coding Sequence
- ATGGAGTCCGTATGCAGAACGTGTCTTGGAGATGTTATAAATAGTTACAATATTGAAGACATTCAACTTGTAGAAATATTCGAAAAATTCACTAGTATCAAGGTAACATTGAACACCATAAAGAACCTTAACGTTGGAATAAAACATAACTTATCGATGACTCCTGCACTGTTAGTGTCTACGAATGATGATTATATGATCCACGATTTCACTGACCATGCACAACCTCTCACATCAAACAGACAAGTAAATAGtcatgtatatatgtatgataCTCCATTAAGTATTAAAATAGAAGTAGATGTAAAAAGTGAAGTTGTTTTCGAAAATGCAATTAAAACTGAGAATATGGAAAATGAAGATGTTGAATTGGATGATAGTTCAGTGATACATTCTCCAAACGAGACAATTAATGAAGCAAGTAATTCAAGTGCTCGTTGTAATATTTGTCATAAAACATTCTCCACAATACACCTATTAAAGTCACATATGATAAGTCActctggagaaaagccatatacttgcGAAAAGTGCGACAAAACATTCTCTAGAAAACATAATATGGTGCAGCATATGAACACTTGCTCCGAACAGCACAAAAGTCACACAAATTCAGATGAAATGTCATATGGTTTTGATTGTGATGTGTGCAACAAGAAATGTGCTTCGAAACATCATCTAATATCACATTTAATTACTCATTCTGGAGAAAAGCCCTACAAATGTGAGGGTTGCAAGAAATCTTTCTCAAGAAAGCAAAATATGAAACAACATATGAAAATTTGCGCAGAAGTAAAACCTACTCCCCAAACATTCCCCTGCCCATTTTGCACCCAAATCTTCGATTGCGAAAGTGATCTAAGCAATCACGTCATACTCCACAATGAATCAAAACCATTCAGCTGTGAGAAGTGTAAAAAAAGATTTTCCAGAAGACCTAATCTTAAACAGCATATGAAAATATGCTTCCTTGAAAACGAACCTGTAAACTGCACTATCTGCCCCCAAACATTCGCTACGAGAAGCGATCTATGCAAACACTTGAATAATGACCACATAGAAGAAAAACCATATATATGCGACAGATGCAGCACCAAATTCTGGCATAAAAGCCATTTAAAAGCGCATATGAGAATTCACACCGGTGAAAAGCCATATACCTGCGAAAGGTGTGGTAAAACGTTCACATTACGAAACCATTTAAGAGCACACATAGGAATTCACACTGGAGTGAAGCCGTTCGCTTGCGAAATATGCGGGAAGGCGTTCCTTCTTAACGGCAATTTGAAAGAACATATGAGATGCCACACCGGTGAAAAGCCATATGCATGCGACACATGTAACAAGTCATTCGGGCATCAGAGCACTCTTACACAACACAAGCGTAGAGTGCACACCGAACAAAAACCTTTCATCTGCAGCAGATGTTCCCTTTCATTTACAAAAGAAAGCCATTTGAATATACACATGAGAGTTCACACAGCGGACCGGCCCTTCGCATGTCATATTTGCGACAAAACATTCTTCGAAGCTCGTTATTTGAAAGGGCATATGCAGGTACATTCCGAGATTCGAGCTCATGTGTGCGCGTGCGGGAAGGCGTACAAGCGGCCGGAGCATTTAAAACTGCATATCAAAGATAAATGCAAGGCTAGTTTTGCCATGCCCGGAGCTGACTTACAAACATAA
- Protein Sequence
- MESVCRTCLGDVINSYNIEDIQLVEIFEKFTSIKVTLNTIKNLNVGIKHNLSMTPALLVSTNDDYMIHDFTDHAQPLTSNRQVNSHVYMYDTPLSIKIEVDVKSEVVFENAIKTENMENEDVELDDSSVIHSPNETINEASNSSARCNICHKTFSTIHLLKSHMISHSGEKPYTCEKCDKTFSRKHNMVQHMNTCSEQHKSHTNSDEMSYGFDCDVCNKKCASKHHLISHLITHSGEKPYKCEGCKKSFSRKQNMKQHMKICAEVKPTPQTFPCPFCTQIFDCESDLSNHVILHNESKPFSCEKCKKRFSRRPNLKQHMKICFLENEPVNCTICPQTFATRSDLCKHLNNDHIEEKPYICDRCSTKFWHKSHLKAHMRIHTGEKPYTCERCGKTFTLRNHLRAHIGIHTGVKPFACEICGKAFLLNGNLKEHMRCHTGEKPYACDTCNKSFGHQSTLTQHKRRVHTEQKPFICSRCSLSFTKESHLNIHMRVHTADRPFACHICDKTFFEARYLKGHMQVHSEIRAHVCACGKAYKRPEHLKLHIKDKCKASFAMPGADLQT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -