Ptra012868.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Philereme transversata
Gene Symbol
-
Assembly
GCA_963924445.1
Location
OZ004342.1:33258749-33263735[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.0012 0.12 14.0 1.2 1 23 168 190 168 190 0.97
2 17 0.00054 0.053 15.1 2.9 2 23 218 239 218 239 0.98
3 17 0.0037 0.37 12.4 0.4 1 23 245 267 245 267 0.90
4 17 3.8e-05 0.0038 18.7 2.0 1 23 273 295 273 295 0.97
5 17 3.8e-06 0.00037 21.8 1.8 1 23 301 323 301 323 0.99
6 17 0.00041 0.04 15.4 5.3 1 23 329 351 329 351 0.99
7 17 0.00069 0.068 14.7 3.5 1 23 356 378 356 378 0.97
8 17 6.2e-05 0.0061 18.0 1.2 1 23 390 412 390 412 0.95
9 17 9e-07 8.8e-05 23.8 4.4 1 23 418 440 418 440 0.98
10 17 5.6e-06 0.00055 21.3 2.6 1 23 448 470 448 470 0.97
11 17 2.5e-06 0.00024 22.4 5.0 2 23 474 495 473 495 0.96
12 17 0.00016 0.016 16.7 1.7 1 21 501 521 501 522 0.94
13 17 1.4e-05 0.0014 20.1 1.9 1 23 540 562 540 562 0.98
14 17 3.9e-08 3.8e-06 28.1 1.4 1 23 568 590 568 590 0.98
15 17 1.4e-05 0.0014 20.0 3.3 1 23 595 617 595 617 0.96
16 17 0.0003 0.03 15.8 0.0 3 23 624 644 623 644 0.95
17 17 0.001 0.1 14.2 0.6 1 23 650 673 650 673 0.91

Sequence Information

Coding Sequence
ATGTACGCAATCAGCGACACACCTTACAGAGAGATGTATGAAAAACTTACGAGCTCTGAGCTGATCATGACAGGCGGGCGACCTGACTCTGTGTGCTACATTTGCACAGTTCAGCTGCGGAGAAGCCACCGCTTCTTCCAGAAGGCTCGAGAGGCTGAGAAACTACTGTTGGACCTGGTTCTAAATGGTATCGAGGTGAGGCAAGAGACGGTGAGGTCTGCACCCCGGCCCCGGAGCACGCTCGGCACATCCTCACCGGAGGGGCTGAGGGCACAGGTGAAGGAGGAGGCGCTCCACTCGGAGCTGATCATCCACTGCAGAAAAGATGTTCTGGATACCGACCCTTGCCCTGACATCCTCAAACAGGACCCTGAACACACCGCTCCAGCATATACAAACACTAACGGCTCATGTGAAGTGGACTCACTCACATACACTCACCACCTCACAACCAGCACCAAGATATTCCTGGAGAGGCACTTTCGCGCTTCTGCAGAGACCTACGCCTGTGGCCAGTgctacaaaaactttaattcagaaaagtttttaaaattacatATAAACAGTCACACATTGTTGGCATGTGACGTCAAGTGCGATAGTGATATCAGTTTGCGTAATCCTCAAGAAACGCACAGCAACACGTCAGCGAAATGTACTCAGTGCGGCAAAGTATTCTCTTGCCAAGAAGCGCTAAAGACTCACGTAAAATCCCACACGCGAGTCAAACCATTCGCGTGCGGCAACTGCGATAGGACGTTCCGCCGCCGCGACGAACGCGACAAACACGCCGGGATCCACACGCGTGACAGGCCCTTCGCTTGCCACATGTGTACTGAAACATTCGCCAAAAAATTCACTTTAGAAACTCACATAAGAGTTCATACGAGTAAACCGCTTTATACCTGCGACGTTTGCGGCAAACACTTCATCTATAAGAGCACGCTCGTCACGCACGCGCGCTCGCACACAGGGGAGAAACCGTTTAAATGCGAAAAGTGCGATAAAAAATTCAGTtgtaaaaataacttaaatataCACACTCTCACGCACTCAGACGAGAAGTTTGCGTGCGATGTTTGCCAAAGAGACTTCAAATACAAATGCAGTTTGAAACTGCACGTCAAAACTCATACAGATAATGATAACGCCGATGAAGAGAAAACGTATTTGTGCGTTAGGTGTCCTAGAACATACAATCGCGAGTCATATTTGAATAACCACATGAAAAGCCACACGGAAGAGAAACAGTTCGTCTGCAAGACGTGCGGCAAAGCATTCTATCGCAAACACAACTTATTTAAACACGTTAACACCCATCCTTGTGAAGGACAGGACGCGTTTTCATGTGATAAATGCGACAAaacatttacaaacaaaaacagTTTAAGGTTGCATAAAGAGATGCATATCGGCCTGTCGTGCGAAATCTGCCATCGTACGTTCAACAGAAAACACAATCTCAGATCCCACATGATGATACATAGCGGAGAGAAGCGCCACGCGTGCCAAACCTGCGGCAAACGCTTCTACGAGAAATACAAGctaaaaaaacacataaaagcGTTCGCGGGGAAAGAGCACCCCTACGCGGAGCCCCACAGCGGCGCACAATCCTTCACGTGCGCCGTCTGCAACCACACCTTCAATAAAAAAAGCAATCTAATAAACCACATCACAATCCATTCGGGGGAAAAGCCCTTCGTGTGCGACAGATGTGGCAAAAAGTTCGCGAACAAAAGTAACCTAAAAAAGCACATGACGGTCCACGATGACGAACAGCACGCGTGCGACAAATGCGATAAAAAGTTCAACTCGAAGAGCTACCTGAAGATCCACAGTCGAGTGCACTCGGGCGAGCTGGTCGCGTGCGGCGCGTGCGGGCGCGGCTTCACGCGCGCCGCCGACCTGCGCGCGCACGCGCGACTGCACTCCGGCGAGAGGCCCTTCGCGTGCCGCGCGTGTGGCCGCGCCTTTAGCCGACCGTGCAAGCTGAAGGCGCACGTCGCTAATATGCACCCGACACAGGGACAAAATACGATTTATTATTGA
Protein Sequence
MYAISDTPYREMYEKLTSSELIMTGGRPDSVCYICTVQLRRSHRFFQKAREAEKLLLDLVLNGIEVRQETVRSAPRPRSTLGTSSPEGLRAQVKEEALHSELIIHCRKDVLDTDPCPDILKQDPEHTAPAYTNTNGSCEVDSLTYTHHLTTSTKIFLERHFRASAETYACGQCYKNFNSEKFLKLHINSHTLLACDVKCDSDISLRNPQETHSNTSAKCTQCGKVFSCQEALKTHVKSHTRVKPFACGNCDRTFRRRDERDKHAGIHTRDRPFACHMCTETFAKKFTLETHIRVHTSKPLYTCDVCGKHFIYKSTLVTHARSHTGEKPFKCEKCDKKFSCKNNLNIHTLTHSDEKFACDVCQRDFKYKCSLKLHVKTHTDNDNADEEKTYLCVRCPRTYNRESYLNNHMKSHTEEKQFVCKTCGKAFYRKHNLFKHVNTHPCEGQDAFSCDKCDKTFTNKNSLRLHKEMHIGLSCEICHRTFNRKHNLRSHMMIHSGEKRHACQTCGKRFYEKYKLKKHIKAFAGKEHPYAEPHSGAQSFTCAVCNHTFNKKSNLINHITIHSGEKPFVCDRCGKKFANKSNLKKHMTVHDDEQHACDKCDKKFNSKSYLKIHSRVHSGELVACGACGRGFTRAADLRAHARLHSGERPFACRACGRAFSRPCKLKAHVANMHPTQGQNTIYY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-