Ptra017191.1
Basic Information
- Insect
- Philereme transversata
- Gene Symbol
- -
- Assembly
- GCA_963924445.1
- Location
- OZ004345.1:8511926-8521364[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 2.5e-05 0.0025 19.3 1.1 2 23 181 202 180 202 0.97 2 17 0.02 1.9 10.2 0.2 2 23 207 229 206 229 0.89 3 17 2.2e-05 0.0021 19.5 0.6 1 23 235 257 235 257 0.98 4 17 4.8e-07 4.7e-05 24.7 1.6 1 23 262 285 262 285 0.98 5 17 0.00055 0.054 15.0 1.1 1 23 299 321 299 321 0.99 6 17 7.4e-05 0.0073 17.8 2.3 1 23 327 350 327 350 0.94 7 17 1.5e-05 0.0015 20.0 0.2 1 23 356 378 356 378 0.98 8 17 1.4e-05 0.0014 20.0 0.9 1 23 383 405 383 405 0.97 9 17 5e-05 0.005 18.3 1.6 1 23 411 433 411 433 0.99 10 17 0.0087 0.85 11.3 0.2 3 23 441 462 439 462 0.93 11 17 1.1e-05 0.0011 20.4 1.6 1 23 468 490 468 490 0.98 12 17 8.5e-06 0.00083 20.7 0.6 1 23 496 518 496 518 0.98 13 17 8.5e-05 0.0083 17.6 1.2 1 23 524 546 524 546 0.98 14 17 9.7e-07 9.5e-05 23.7 0.7 1 23 552 574 552 574 0.98 15 17 3.5e-08 3.5e-06 28.2 1.7 1 23 580 602 580 602 0.98 16 17 7.7 7.6e+02 2.0 3.5 1 23 608 628 608 628 0.75 17 17 7.7e-07 7.6e-05 24.0 2.2 3 23 635 655 634 655 0.97
Sequence Information
- Coding Sequence
- ATGTCGGAGCCGTGGATTTCCAAAGGCCTTTGCCGCCTGTGTCATCATACAGAAGGTCCATACAGGAGCTTAGAAGCAAGTTATACTCATGAAGGGAAGGAAGAAATTTACTCTGTCATTCTACATGATACTTTCGGTATTGTAcTCACACCAGTTTCCACCAATCCATTTGCTGTGTGCATCTGTGGTGCGTGTGAGTCGCGGCTCCGGGATGCCGCTATCTTCAAAAAGCAGGTGCTGGAATGTGAGAAGCGGTTTAATCACGTCTTCTTGCAAGATGGCTGCTTTAAAAATGAAGTCAAAGAGGAAACTGATAGTCATACAGAAGGATTGTATGGAGAAACCGTGAACATACAGCAACAAGATGATAATAAATACAATGCATCAAAATATTTGGAAACTGTCGGTCCTCAAAATACTCCAAAGAGCCTCCCTGCTCGTCAGAACAGCTCAGGGTCTGGTGACTGGCTCCCGGAGGCGTCACAGGATTATAGTGATGATGATGAAGACTTACAAACCAAAGCGAAAATCAAGAAGCTCTCCTGCAGTTTTTGTAAAGAAAAATTTGAAAACAACAGCCTCTTACAAGCCCATTTAAAAACACATACAGGTGAAATATCATGTCTCATATGTACTGAATATTTCTACTCAAACACAGATCTAATCAAACATTATGGGTTGGAACACGGCGATGGAACTAATTACCCATGTACTATGTGCTCGAAGGTTTTTGAGAAACCCTTGTTACTCAAAAACCATTTGAAGACACATTTTGAGAAGAAATTTAAGTGCACCGATTGTGAAAAGGGATTTGAGAGGAAGAAAGATTTAAGGACACATATTAGGAAAATTCATACAGATGAAGATTTCAAACCAGAAGTGAAAATCAAAAACTTCAAGTGCAGTGTTTGTAAAAAGCAATACTTAAACGAAGGGACACTAGAAAAGCATATGAAAATacacattaataaaaaaacatacacgtGTCTCATATGCACAGAATCATTCTGCACAAACTCAGAACTGATCAAACATTATGGATCAAAACACGGCGATGGAACAAAATACCCTTGTACAATATGTTCCAAAGTTTTCGACGAACCAATACTTCTCAAAAACCATATCAAAAAACACGCAGCTAAGAAATTTAAGTGCACCGAGTGTGATAAAGAATTTCAAACTAAATTTGCTCTAAAAGAACACATAGAATTACATACAGGCGCGAAAAAGTTCCAATGTGATATTTGTCAGAAAGTATTTCTTAATAAACCGACATTCAAATCTCATATGAATACACATAACGGTGAGAAATCGTCTATATGTGATTCGTGCGGCAAAAGATTCCTATTAAAAGCGGATTTGAAAAGACATATAATCCTCGTACATAAAAACGTTAAAGCCTTTTCCTGTGACATTTGCAAAAAGAATTTCTCCGCTAAAAGTTATTTGGCGACACATCAAAGACAGCATACTGGGGAAAAGCCATATTCCTGCGAAGTTTGTAAGAAAACATTCGCTGCGTACACTACTTTAAAGGTTCATATGAGAGTTCATTCTGGTTACAAACCATATGCGTGCAGTTATTGCGATCGTCAATTCGCCCATGTTGGCTCATACAGAGTTCATGTGAGAACACATACGGGTGATAAACCGTTCAGCTGCGAAATCTGTCGCAAATCCTTCTCAGATAATGGCTACCTAAGAATCCATTTAAGACTGCACTCTGGAGAAAAACTGTTTTCCTGCGAAATCTGCAATAGGAGTTTCAGCGAAAAATCCGGATTGAAAAAACATATGAGAACTCATACGGGGATTAAGCCTCATACgtgtaaaatttgtaataaaCAGATATCAGATTTGCCAAAGCATATGAGAAGGGTTCATAGCAGTGAGAGACCTTGCTGTAATATATGTAATAAGCCATTTAGGAAGAATGATGATTTGAAAGCCCATATGAGAATTCACACCGGAGAAACGGAATGa
- Protein Sequence
- MSEPWISKGLCRLCHHTEGPYRSLEASYTHEGKEEIYSVILHDTFGIVLTPVSTNPFAVCICGACESRLRDAAIFKKQVLECEKRFNHVFLQDGCFKNEVKEETDSHTEGLYGETVNIQQQDDNKYNASKYLETVGPQNTPKSLPARQNSSGSGDWLPEASQDYSDDDEDLQTKAKIKKLSCSFCKEKFENNSLLQAHLKTHTGEISCLICTEYFYSNTDLIKHYGLEHGDGTNYPCTMCSKVFEKPLLLKNHLKTHFEKKFKCTDCEKGFERKKDLRTHIRKIHTDEDFKPEVKIKNFKCSVCKKQYLNEGTLEKHMKIHINKKTYTCLICTESFCTNSELIKHYGSKHGDGTKYPCTICSKVFDEPILLKNHIKKHAAKKFKCTECDKEFQTKFALKEHIELHTGAKKFQCDICQKVFLNKPTFKSHMNTHNGEKSSICDSCGKRFLLKADLKRHIILVHKNVKAFSCDICKKNFSAKSYLATHQRQHTGEKPYSCEVCKKTFAAYTTLKVHMRVHSGYKPYACSYCDRQFAHVGSYRVHVRTHTGDKPFSCEICRKSFSDNGYLRIHLRLHSGEKLFSCEICNRSFSEKSGLKKHMRTHTGIKPHTCKICNKQISDLPKHMRRVHSSERPCCNICNKPFRKNDDLKAHMRIHTGETE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -