Ptra033007.1
Basic Information
- Insect
- Philereme transversata
- Gene Symbol
- -
- Assembly
- GCA_963924445.1
- Location
- OZ004355.1:2895697-2896098[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.3e-06 0.00038 21.2 0.0 3 38 12 48 10 53 0.88 2 2 4.1 6.8e+02 1.2 0.1 17 25 104 112 101 112 0.88
Sequence Information
- Coding Sequence
- ATGGAAGACAAAAAGAACCGAAAGTATTCGGAGTCTGATCTGAAAACCGCCGTCGAAAATGTTTTGAGTTCAACAATGACAGTATACAGAGCTTCTAAGGAGTTTAAGATTCCATGGACGACGTTAAAAGAGAATGTGACTAAGTACAAAACTCTACGAGAGGATAATCAAGATGCACAGATCGTCATGTCCAAGATAGGAAGGCCGTTTGCGTTACCTGTTGAAATAGAACAAAAGTTACTGGCCTACATTATTGAGATGCAAGAACGTGGTTTTGGTCTTACAGTTACCAAAATAAAGCAAATTGCATTGTCTTTAGCAAAAGCTGCGAATATAAGCTGCACATTTAATGACGAAAAGGGATCTGCAGGTTGGAATTGGTGGGTGAAGACAACAATTTAA
- Protein Sequence
- MEDKKNRKYSESDLKTAVENVLSSTMTVYRASKEFKIPWTTLKENVTKYKTLREDNQDAQIVMSKIGRPFALPVEIEQKLLAYIIEMQERGFGLTVTKIKQIALSLAKAANISCTFNDEKGSAGWNWWVKTTI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00036594;
- 90% Identity
- iTF_00036594; iTF_00726276; iTF_00036585; iTF_00036586; iTF_00036587; iTF_00036588; iTF_00036589; iTF_00036590; iTF_00036592; iTF_00036593;
- 80% Identity
- -