Ptra011780.1
Basic Information
- Insect
- Philereme transversata
- Gene Symbol
- -
- Assembly
- GCA_963924445.1
- Location
- OZ004342.1:16868600-16869235[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.8e-08 2.9e-06 28.0 0.1 14 41 26 53 18 57 0.83
Sequence Information
- Coding Sequence
- ATGGTTAATACGTATAAAAGAAAGTCCCAACGTGGATCGTGGTATTCGGAAACCCTAGCGCAGGCCATGGTGGAAGCAAAAAGTTTTTCTATGCGCCAAGCTTCTCTCAAATATGGTATTCCGTATGGCACCTTACATAGACATCTTCAATCCAATTGTACTGAGAAAAAATTGGGTAGATTTCGTCCCGTGTTTACTCCGGACGAAGAAAAGCTATTGACGGAATACATTCAGAAAGTAGATTCTCTGTTTTACGGTCTGACGAGGATAGAGTTTATGCAGCTAGCAGGACAGTTTGATAAAGCCAAAAATATGGAAACTAGATTTAAAGATGACGTTGCTGGTAACACCTGGTTCAAATCATTTCAAAAAAGAAACCCAACAATTGTACTGCGAACACCGGAGCCTACATCAATTGCAAGAATAAAAGGGTTCAACAAGCATCAAGTGAACCGCTTTTATGATCTCTTAGAAGAacagatgataaataataatattgagcTATCCAGAGTCTATAATATGGACGAAACCGGGGTTAAGACTTCGACGTCGAGGCCTCCAAAGATTTTGACTACACAAGGAAAAAACAGGTCGGCATTGTATCTAGTCTGGAAAGAGGAGTGCTTACAACTGTAA
- Protein Sequence
- MVNTYKRKSQRGSWYSETLAQAMVEAKSFSMRQASLKYGIPYGTLHRHLQSNCTEKKLGRFRPVFTPDEEKLLTEYIQKVDSLFYGLTRIEFMQLAGQFDKAKNMETRFKDDVAGNTWFKSFQKRNPTIVLRTPEPTSIARIKGFNKHQVNRFYDLLEEQMINNNIELSRVYNMDETGVKTSTSRPPKILTTQGKNRSALYLVWKEECLQL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01182735; iTF_00634364;
- 90% Identity
- iTF_01182735;
- 80% Identity
- -