Ptra004033.1
Basic Information
- Insect
- Philereme transversata
- Gene Symbol
- -
- Assembly
- GCA_963924445.1
- Location
- OZ004338.1:19304448-19305236[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.1e-09 1.7e-07 31.9 0.0 2 43 17 58 16 60 0.93
Sequence Information
- Coding Sequence
- ATGCCGCGACAATATGAGAGAAAGTCACTGCGGGCAACATCGTATTCGCAGGAGGATTTAAGATCGGCAGTAGAACGAGTAAAAAGCGGAGAACTCTCTAATTATGCAGCATCAAAACTTTACGGTATCCCTACTTCTACACTTAATGACCATGTTAAGGAAAAAACAGGCTTGCTAAGTCAAACACTTGGCCGGCCCCCTGTAATCCCTATAGAGATGGAGAATAAGCTGGCATCTTGTCTTAGAACCTTGGAAAAATGGGGCTGGGGCTTATCTAGGACAGAAATTTTGGACTTTGTCTCAGAATTCATTAGGGCAAACAAAATTATTACACCTTTTAAAGACAACCGACCTGGGCCAGATTGGTTCATCTCATTTCGATTAAGACACAACctgtcaataaaaaaaccgcAATCTGTAGAGCATCTTAGAAAAAGAATGACAGATCCATTCGTGATCGCtgaatactttactttactgAAAGAGACGCTACTGGAATTAGGTATACACAAACCTGAGCAGATTTGGAACCTAGATGAGACATCGGTATGTCTAGATCCAACGAAAACTAAAGTTGTTGGCGGCAAAGGCCTTCCATGCACAAGGACTACACAAGGTTCTGGGAAAGAAAATATTACAGTATTAACAACCGTCAATGCGGCTGGCACGAAATTGTCTCctttgataattattattttcaaaggtAAATACATGTACAATGAGTGGATGAGCGCGAATCAAACAGACAAATATGATTTTGAGATTTCTTATGATGATATTCttatgtaa
- Protein Sequence
- MPRQYERKSLRATSYSQEDLRSAVERVKSGELSNYAASKLYGIPTSTLNDHVKEKTGLLSQTLGRPPVIPIEMENKLASCLRTLEKWGWGLSRTEILDFVSEFIRANKIITPFKDNRPGPDWFISFRLRHNLSIKKPQSVEHLRKRMTDPFVIAEYFTLLKETLLELGIHKPEQIWNLDETSVCLDPTKTKVVGGKGLPCTRTTQGSGKENITVLTTVNAAGTKLSPLIIIIFKGKYMYNEWMSANQTDKYDFEISYDDILM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01182711;
- 90% Identity
- iTF_01182681; iTF_01182682; iTF_01182683; iTF_01182689; iTF_01182675; iTF_01182676; iTF_01182677; iTF_01182678; iTF_01182679; iTF_01182807; iTF_01182808; iTF_01182809; iTF_01182810; iTF_01182684; iTF_01182673; iTF_01182711;
- 80% Identity
- iTF_01182681; iTF_01182682; iTF_01182683;