Pdid019381.1
Basic Information
- Insect
- Philaethria dido
- Gene Symbol
- -
- Assembly
- GCA_033558755.1
- Location
- JAKGSA010002878.1:9698-12226[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.14 9.7 7.3 0.2 3 23 22 43 20 43 0.93 2 18 1.2 82 4.3 0.2 2 23 69 91 68 91 0.94 3 18 0.066 4.7 8.3 0.4 2 23 114 135 113 135 0.96 4 18 0.00019 0.014 16.2 0.8 3 23 141 161 139 161 0.96 5 18 1.9e-06 0.00013 22.6 0.9 1 23 166 189 166 189 0.98 6 18 1.4 99 4.1 0.2 2 23 197 219 196 219 0.84 7 18 0.00011 0.0076 17.0 0.6 2 23 227 249 226 249 0.96 8 18 5.8e-06 0.00041 21.0 1.6 1 23 255 277 255 277 0.98 9 18 1.9e-05 0.0014 19.4 4.1 1 23 283 305 283 305 0.99 10 18 0.00016 0.011 16.5 2.7 1 23 311 334 311 334 0.97 11 18 0.0014 0.099 13.5 1.2 1 23 396 419 396 419 0.96 12 18 0.032 2.3 9.2 0.1 1 23 445 468 445 468 0.95 13 18 0.0032 0.23 12.4 0.3 2 23 491 512 490 512 0.96 14 18 0.83 59 4.8 0.0 1 21 516 536 516 538 0.85 15 18 0.043 3 8.8 1.8 1 19 543 561 543 566 0.84 16 18 0.00068 0.048 14.5 0.9 2 23 604 626 603 626 0.95 17 18 0.006 0.43 11.5 3.9 1 23 632 654 632 654 0.97 18 18 0.00099 0.07 14.0 2.0 1 23 660 683 660 683 0.98
Sequence Information
- Coding Sequence
- ATGACCATTTTGCTATATTCCAACGCGAATCCGATCAGATCGAAGGACAGTCTCGGATACGGATGTGCATTTTGTCTCGAGCAATTTCAAAATCCAACTGATCTCaagaaacattttttagtaGAACACAACAATGACAGACTGATTCAATATATGACGTCTAGATTATTCGAACATGTCGTCAAATTAGACATTACCTACTTAAACTGCTCCCTCTGCAGTACTAATATAGCGAAATTGGAGGATTTGATGCTACACTTGAAGAATGagcataaaaaagaaatacacacAGACATAAATAATACTATAGTGCCGTTTAAGTTTGACACTCCGGAACTAAGGTGCGCGATCTGTTCTACGGAATATCTCAACTTCAAGCTGTTACAGGAACATATGAACACGCATTTTGGTTATCATTTATGCCCGATGTGTAGCCGAGGATTTATTACTGAGCGCCTTTTAGCAACTCATATTAGGAGGCATGACAACGGAGTGTACAAGTGTCAGGAGTGCGACAAAGTTTTTGGAAATAACGAAAGGTTAAAAGAACATCAGAGAAGGATACATTTAGGGTTCAATAAACGCAACAAGTGTATGATTTGTGATGAACGTTTTATGGATTATTGGAGGAAGGTAGACCATATGGTCAAAGCGCATGGAGCGCCACCCGTAGTTATAAAGTGCCAGGCTTGCGACCGCACCTTCATCAACCAAAGAGCTCTAGCGCGGCATACTAaaaaggaccatctgatggaaAAGAAACACCAATGCGAAGAATGTGATATGAAGTTCTTCAGCGCTAGCGGCTTAAAACGTCACATGGCGAAGCACACTGGATTACGCGAGTTCAGATGTGATATTTGCTTCAAATGTTATGGCAGGAAAACTACATTAAGGGAACATATGCGTATCCATGCAGATGACCGCCGGTTTGCTTGTAGCCGATGTGGTCAGGCCTTCGTACAGAAGTGCAGTTGGAAGAGTCATATGAGATCCAAGCATGGTGACCAGAAACTAACTATTCCTATAAAAGTGGAAAGAAATGTCCGGAAAGGCAAAACTATTCAGATAACCATCGGAAAGAAACTAAATGACATGCCAGAGGTGGAGAAacatcagaataatataaaagaaatcctTTTGAACACGAATGCTACGCCCATTCGTTGTAAGGGAGGCATCGGTTATACGTGCTGCTTCTGCACTGAGCAATTTCCTGACCCGAAAGATTTAAAGACACATGCTCAAGTACTTCACAGTGCTGAGGAAAAATCTAACTTTATGAAAGGCAAAGACATGCACGGCTACTTCGTTAAATTAGatataactgattttaaatgCCAAATTTGTGGAGAGAACGTTGAAAATGTTGAGAAAATGGCCAATCACTTACAATTGAATCACGACAAGAAGTTTTACACGGACATCAAGGATCATATATTACCCTTTAAATTTGGTAATGGACCACTCAACTGTTCTATTTGCTTGAATGTATTTAATTCGTTCAAAGCTCTTCAAGAACATATGAATGTGCACTACAATAACTATTTATGCGTCGTCTGCGGCGCGGGATTCGTTAATAAGAATATTCTCCTGAGACACGGAGATGCGCACAAAATAGGAACATTTAAATGTGAAATATGTTCTAGAACATTCGATACGGCGCGGAAAAAGAGACTGCATGATAGATCGAGACATTCCGGGATAAAGTTACCTCACAAATGTGGTTATTGTATGGAGAGATTCAAAGAAGTTTGGAAGAAACAGGAGCATTTGGTCAAAATCCATGGAGTTAAAAGCCCTGGCATAAAATGCCAAGCGTGTGATAAGAGTTTTGAGAGCAAGCATTCTTGGAGGCTGCATATAGCGAGAGTGCATCTGTTGCAAAGACCTCATAAATGCCAGCATtgcgaaatggaattttatgcCAAGAAAGAACTGGAAAGCCACATGGTGAAACACACTGGCTCCAGGGAGTTTAAATGTGAATCATGTTTCAAGACTTACGGACGTCTGAAGACTTTGAAGGAACATGTCAGAAAAGTACACACATAA
- Protein Sequence
- MTILLYSNANPIRSKDSLGYGCAFCLEQFQNPTDLKKHFLVEHNNDRLIQYMTSRLFEHVVKLDITYLNCSLCSTNIAKLEDLMLHLKNEHKKEIHTDINNTIVPFKFDTPELRCAICSTEYLNFKLLQEHMNTHFGYHLCPMCSRGFITERLLATHIRRHDNGVYKCQECDKVFGNNERLKEHQRRIHLGFNKRNKCMICDERFMDYWRKVDHMVKAHGAPPVVIKCQACDRTFINQRALARHTKKDHLMEKKHQCEECDMKFFSASGLKRHMAKHTGLREFRCDICFKCYGRKTTLREHMRIHADDRRFACSRCGQAFVQKCSWKSHMRSKHGDQKLTIPIKVERNVRKGKTIQITIGKKLNDMPEVEKHQNNIKEILLNTNATPIRCKGGIGYTCCFCTEQFPDPKDLKTHAQVLHSAEEKSNFMKGKDMHGYFVKLDITDFKCQICGENVENVEKMANHLQLNHDKKFYTDIKDHILPFKFGNGPLNCSICLNVFNSFKALQEHMNVHYNNYLCVVCGAGFVNKNILLRHGDAHKIGTFKCEICSRTFDTARKKRLHDRSRHSGIKLPHKCGYCMERFKEVWKKQEHLVKIHGVKSPGIKCQACDKSFESKHSWRLHIARVHLLQRPHKCQHCEMEFYAKKELESHMVKHTGSREFKCESCFKTYGRLKTLKEHVRKVHT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -