Basic Information

Insect: Philaethria dido
Gene Symbol: ham
Assembly: GCA_033558755.1
Location: JAKGSA010000475.1:59273-76792[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.15 10 7.2 0.0 2 23 128 150 128 150 0.94

2 9 0.00065 0.046 14.6 1.2 1 23 157 180 157 180 0.93

3 9 1.6e-08 1.1e-06 29.1 0.1 1 23 186 209 186 209 0.96

4 9 1.4e-06 9.8e-05 23.0 1.7 1 23 215 237 215 237 0.95

5 9 4.2e-05 0.003 18.3 5.9 1 23 243 265 243 265 0.99

6 9 0.00055 0.039 14.8 0.2 2 21 273 292 272 293 0.94

7 9 1.2e-08 8.4e-07 29.5 0.7 1 23 677 699 677 699 0.98

8 9 4.3e-07 3e-05 24.6 1.7 1 23 705 728 705 728 0.97

9 9 4.6e-06 0.00033 21.3 3.3 1 23 734 756 734 756 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.15	10	7.2	0.0	2	23	128	150	128	150	0.94
2	9	0.00065	0.046	14.6	1.2	1	23	157	180	157	180	0.93
3	9	1.6e-08	1.1e-06	29.1	0.1	1	23	186	209	186	209	0.96
4	9	1.4e-06	9.8e-05	23.0	1.7	1	23	215	237	215	237	0.95
5	9	4.2e-05	0.003	18.3	5.9	1	23	243	265	243	265	0.99
6	9	0.00055	0.039	14.8	0.2	2	21	273	292	272	293	0.94
7	9	1.2e-08	8.4e-07	29.5	0.7	1	23	677	699	677	699	0.98
8	9	4.3e-07	3e-05	24.6	1.7	1	23	705	728	705	728	0.97
9	9	4.6e-06	0.00033	21.3	3.3	1	23	734	756	734	756	0.98

Sequence Information

Coding Sequence: ATGATAAATGTCCAAGCTGACGATCTGACACAGACTAATAGTGCCATCTATCGTGAAGCCGCGATGTCCGCTGATGTTCTTGGAAAAAATGGCGTTCGTGGATGGCTTGATGGTACTACAGAGAAGTCAAACTGGCTTAAGTTCGTCAGATCTACCACGTATTCTCATGACGTGAATGTTCAACATTTGCTGATGGCAGGACAAATTTGGTACAAAGTGACGCGGGATGTTCCATCGGGACAAGAATTGCTGTTGGGTCCACGTACGCCACTGCCGTTACAAGATGTGTTCACTGCTTCTAGTGGTCGAGACAGCTCTAACTTAAGCTCATCCAACTCGCAAACCCTTACTGAAGACGAAGACCGAGAAGACACAGAGCCACGTTGTTCGTTCTGTGATGCACCGTATCCCAATATTGATGCatTAGATCGTCATTTAATACAAGCGCACGCGCAACCTGCTTCTGCGTTTCACTGTGAGCTTTGTAATCGTGCTTATAGTACTCGAGCTCTGCTGCTTCGGCATCGCGCTCTAACGCATACTGATATTAGGAAATATCCTTGCGAAAATTGTCCAAAGGTATTTACCGATCCTTCCAACCTCCAGCGCCACATCCGCGCGCAGCACGTCGGCGCCCGCAGCCACGCCTGTCCCGAGTGCGGCAAGACCTTCGCTACATCCTCCGGCCTGAAGCAGCACACTCACATACATTCCAGTGTCAAGCCGTTCCAGTGTAAAGTTTGCTATAAAGCCTACACACAGTTTTCAAATTTGTGCCGTCACAAGCGAATGCACGTCGCGTGTAGAGCTCTAGTGGAATGCGTGAAATGCGGTCAGTCTTTTCCGTCATACGCCTCCTTGACGAAGCATAAGAGATTTTGCGATACTGCCACAGTTAACGTAAATTTACGCGGTCAATTGCCCCAAGGCCTTCCTCAAATACCACCACTACCGAACGTCATGAATACTCCAAACAATACAAATCCGTTTCCAATGTATAGAGGACCTGGACTACCTCTGCCTTACAATACGTTTGCTCACTATCCTGCGATATTttcagcagcagcagcagcgtGCCCACCGGAGTTTCTTAGTCCTCTTCTTTTTAATGTTCAAGGAGCTAGACTTGCTATGGAACATGATATAGCTATGAACGCTAATTTAGTAGCAAAACAAGAAGGACGCATGTCTGTTAAGAGTATTGATAGTTCAACATCTGTAGACGATATGAAGAAGAAAGACGTAGATATTGAAAAAAGTGATGGGGATAGAGTGACTCCAAAACAACCCAGTTTGTACGTGAAACAATCTCCACCATCAGCCGAGGAAGCTTCGTCAAAACAACGACCTTCTCCAGTTATGCCAATGTCTACTGCGATTCCACCATATAATTATGCAAGGGacgaaatgaaacaaaattctCCATTCAATTTGTCAATGAAACATAATGACATACTAGGAAGCAAGTCTGTATCACCAGCTCTTTCTAAAGATATGACTAAAAACTTTGATGATTCTGACAAAAAATCTAGATATTCAGATATAGAGGACGAGGCAGGAAAAGATCAGAATGATCAACCACTTGATTTATCTGTTACACGAAAACATGACAAAGAGTCGGACATGGAGAATGACGATCATTCCTTTCGTAATTCTTCAATAAAGTCATATTCACCACCTGAAAGTCCAATTGATCGAGAGAACAAAACACCTGAGAACGAGACAGCTAATGTTGACGTAGAAGCAGTTGAAATTGAAGATTCTCCGCAACCATTAGTGTCGCCTCCAATAGCCTTCCCGATGCCAGTACATCctcaacataataatataatggatGCCATGTACCGGCCACGATTTCCTCAGTTCCACACATCAGAATCTATTCTTAACTCCTCACATTCCCCATATGTTCCCAGCCCTTTCAATTTTTTATCCCCTCTTCTCGGCACTGATGGACCGGATCGGCAAACAAACGCGTATGCAAAGTTTCGCGAACTCAGTTCAGTTTCTGGAAAGCTTCGCGATCGTTACGCTTGCAAATTTTGTGGAAAAGTATTTCCAAGAAGCGCAAATTTGACGCGTCATCTTCGAACACACACTGGAGAACAACCTTACAAGTGTAAGTACTGTGAACGATCTTTCTCTATATCATCAAATTTACAACGTCACGTACGAAATATTCATAACAAGGAGAGGCCCTTTCGATGCCCCCTGTGTGACAGATGCTTCGGTCAACAAACCAATCTTGATCGACACTTGAAGAAACATGAAGCTGAAGGTGGGGACTCCCCGAGTTCCGCCGATACTGAACAAGACGCGTGCTTCGATGATATCCGTTCATTCATGGGAAAGGTGACTTGCTCTCCCAGCGCTGGATCACCTTCGGGAAATTCCCCTCATCCTCCTCACTCTCACCCTCATCGACCTCCTCTCGCTATATCCACATAG
Protein Sequence: MINVQADDLTQTNSAIYREAAMSADVLGKNGVRGWLDGTTEKSNWLKFVRSTTYSHDVNVQHLLMAGQIWYKVTRDVPSGQELLLGPRTPLPLQDVFTASSGRDSSNLSSSNSQTLTEDEDREDTEPRCSFCDAPYPNIDALDRHLIQAHAQPASAFHCELCNRAYSTRALLLRHRALTHTDIRKYPCENCPKVFTDPSNLQRHIRAQHVGARSHACPECGKTFATSSGLKQHTHIHSSVKPFQCKVCYKAYTQFSNLCRHKRMHVACRALVECVKCGQSFPSYASLTKHKRFCDTATVNVNLRGQLPQGLPQIPPLPNVMNTPNNTNPFPMYRGPGLPLPYNTFAHYPAIFSAAAAACPPEFLSPLLFNVQGARLAMEHDIAMNANLVAKQEGRMSVKSIDSSTSVDDMKKKDVDIEKSDGDRVTPKQPSLYVKQSPPSAEEASSKQRPSPVMPMSTAIPPYNYARDEMKQNSPFNLSMKHNDILGSKSVSPALSKDMTKNFDDSDKKSRYSDIEDEAGKDQNDQPLDLSVTRKHDKESDMENDDHSFRNSSIKSYSPPESPIDRENKTPENETANVDVEAVEIEDSPQPLVSPPIAFPMPVHPQHNNIMDAMYRPRFPQFHTSESILNSSHSPYVPSPFNFLSPLLGTDGPDRQTNAYAKFRELSSVSGKLRDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKERPFRCPLCDRCFGQQTNLDRHLKKHEAEGGDSPSSADTEQDACFDDIRSFMGKVTCSPSAGSPSGNSPHPPHSHPHRPPLAIST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00985363;
90% Identity: iTF_00160049;
80% Identity: -