Pdid005722.2
Basic Information
- Insect
- Philaethria dido
- Gene Symbol
- -
- Assembly
- GCA_033558755.1
- Location
- JAKGSA010000214.1:251508-259797[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.0049 0.35 11.8 1.0 3 23 670 691 669 691 0.96 2 22 0.21 15 6.7 0.3 1 22 1069 1090 1069 1090 0.95 3 22 6.8 4.8e+02 1.9 0.3 1 22 1132 1153 1132 1155 0.82 4 22 0.5 35 5.5 0.6 1 14 1164 1177 1164 1185 0.82 5 22 0.14 9.9 7.2 1.1 3 21 1235 1253 1233 1256 0.93 6 22 0.049 3.5 8.7 5.3 1 23 1262 1285 1262 1285 0.95 7 22 0.32 23 6.1 0.0 1 23 1311 1334 1311 1334 0.90 8 22 0.019 1.3 10.0 3.4 1 23 1339 1361 1339 1361 0.97 9 22 0.0098 0.7 10.9 0.2 1 23 1367 1390 1367 1390 0.95 10 22 0.0023 0.17 12.8 1.3 1 23 1402 1424 1402 1424 0.97 11 22 0.0015 0.1 13.5 4.0 1 23 1467 1490 1467 1490 0.96 12 22 0.0011 0.075 13.9 1.1 1 23 1550 1573 1550 1573 0.96 13 22 0.0012 0.088 13.7 2.3 2 23 1596 1618 1595 1618 0.95 14 22 0.088 6.2 7.9 0.1 2 23 1624 1646 1623 1646 0.93 15 22 0.0055 0.39 11.6 0.2 1 21 1690 1710 1690 1711 0.95 16 22 0.0012 0.088 13.7 0.6 1 23 1721 1743 1721 1743 0.93 17 22 8.9e-05 0.0063 17.3 0.3 2 23 1831 1853 1831 1853 0.93 18 22 1.8e-07 1.3e-05 25.8 1.1 3 23 1860 1880 1859 1880 0.98 19 22 0.038 2.7 9.0 0.1 1 23 1896 1919 1896 1919 0.94 20 22 0.12 8.6 7.4 0.0 1 23 1938 1960 1938 1960 0.97 21 22 0.028 2 9.4 0.6 1 23 1966 1989 1966 1989 0.95 22 22 0.0052 0.37 11.7 0.4 1 23 1997 2020 1997 2020 0.96
Sequence Information
- Coding Sequence
- ATGAATGTGAATTATGACCGTGTTTGTAGACTGTGCTTGTCATCTCGATGCGAATTACTACCGATATTTCCTACCACCAGTTCGGATGAGTCTGAACCTCCTGTCCTCGCCTCGAAAATCAAAGATTGCGTGTCAGTACAGataaGCGAAAATGACGACCTGCCAACTAATGTGTGCAGGAAATGCATGGACAATGTAAATAACTGGCACATTTTTAAGTCAATATGTGAAAGGACACAAAATAAATTGCAGTCTCTGCTTAATAAGGAAAACAACCTACTAGAAGAGgtcaaaataaaaaatgaaccaATGTCAGATGAAGCTTATGATGATGGAGTGGTTATAGATGGATCATATCCTGACATTGagaaTGCTGGatcatcaaataaaatacaacctGAAGGTCCACCAATATTGGCTTCATTGGGACTCACGCCGAGGAGTGATAAGAAATATATAGACCCTCGGATGGACTGGCACCGAGTTCATGCAATTCTGGACATGGTCCAAGAAGATGAGGTCATAGATTCCCTTCAGTCTATGGAGGAGTGCGATGTTATTCATCAATCAGACCACAACTCTGAATCTGAAACAGAATTGAATAATGACTTTCTTGGAGACTTTACTGATTGCAAAGATGGATACATATGCAAGAATAAAAGAGTATTGGCAAAAAATCCTAAAATTTCATCAGTCGATACAATAACAAAAGTGAAACAAGTTGTTAACATGAGAAAAAGAAATCATACAGTGAAAAAGCACTGTCCGCAGCCAAGATCTGCATggcaattattttttacagatgATATCTTAGATTTAATTGTTACTTcaacaaatgaaaaaattaccaaatatagtataaaaaaagcaGACAAAACAAATGCTCGCGAAGTTAGAACACTAATTGGAATACTGTATTATCATGGCATAATGCGACCTACACATCAGAAATTCAGCGACCTCTGGCATAATGAGTACGGAGCGCCGTGTGTTCGTAAAGCTATGCAATTGGAGAGATTTAAATTCCTTCTGCAAAACATCAGTTTTGATAATGAGGATGACGACAGTATTGTGCAGTTTGATGTTATGAAGCGAATGAGGaaattgtttgaaatatttgcTTTGAACTGTCGCACGTCATTGGAAGTAGGCAATTTAGTTGTTATTGATGAAGTTATACTGCCCGTGCATGGCCCTTGCCCCTTCCGATATAGTATAAAGGGGAAAAACTTGAAAAATGGCCTTAAATTAGTCATGTTGGTAGATCCAACTAGTTTTTATGTCACAAATTTAGATGTCATAACAGACCCATATTTTGGTAGTGACGAAATAGTTTCGAAATTAGTTCAACATTTGGCAGGAACTGGCAGGACTGTAATTATGGACAGCTGGTTCACATCGAATTCACTTATGCAGAGACTTCATAGTGAATACAAACTTTATAGTATTGGCGCCCTTAGCCCCTCAAATGAGTTGGTCCCACCCTTATTTTTAACCCGTTACAGaagtaaaaagatatttatgaaTGGCTTCCTAGATAATGATGCCTGTCTTACTTCATTTGTGAATGAAAATTCTAATGTTGTCAATATTTTATCGAATGATCCTAAATATTACAAGAGAGCACACAGCAGCCATACATCAGCTGTCTCATTGTATAAGAAATATCAGAGTGCAGTCGAAGTGATTGATGTCTTAATGCAttactacactgctatgcaacATACCAACGACTGGAcactttcattattttttatgcttctCAACATAGCGTCAGTAAATGCACAAGTGCTGTGGAGCTCGGACAATGTCAACACAGTAGTACAAAGACGGggAATGGAAAGCGAGAAAGACGAAGATTTTGAGGAGGAAGATGAACAAGAATTATTAGAGCCACATTCTTATACCAACGTACCAAATATGCCTGAAGTTTCGATAACGGTAATGCGTCCAAGTGGGGAAACTTTACACGCTCGTCAGGGTATACAGCAACTAGCGTCTAAAGACTGTCTCGTTTGTGGAAGATCATACAGATATTCCCATAACGCGAGAAGACACGAACTCACCGCTCACGGCTTCGATAGGTACACAAATAAGGTCACAAATCTAAAGTCCCGAGCTCACATGCAACCTAAGTTTAGACCTAACCCATTTAACCCGAAAGCGCGCCTCATGCCAAATCATATTAGCCATAAAATGCAATATCATCCTAAATCCATGCCAAACAAAATGATACCACATACTGTTGTTGCACAACCAAAGCCGATACCCATTCGAACTGCAAAAACgcttcaaaataatttaccgTACCCTCTTAGAATCAAAGCTCTTAAAGatttacaaataaagaaaaaggaacctcaaattttaaaaactttattgacCTCGAAGCCAGAGGTCTTAGTATCGGAGCCTGAAATAATTAATTCCGGTCCAGAGAGCCCTGAAACATTAATTTCTGAGCCGGAGATTGCGTCTTTTCAAGTAGAAACAATTCTGTCGGAGCCAGACACATTTATTAATACACATCCGGACGATGAAGAAGATGAAAACAACCACGGACCAAACTATGACACTGTTGATATGGATTCAGAGAACGAAATAGAAATTGCACGTCAGCAAGAGAATGAAAATCACGACGATGGGGAGGAAAACCGTCTCGAAATCGATGCAGATGAAAATACACAAGACGAGAATAACATGGAAGAAAATCATGACGAAACTGAAAAAGAACATCACGATGACAATGGAGATAATCAAGATGTTGAGGCGGAGAACAATTTAGATGGAGATACGAATTATGATAACGCCaaagaaaatgaatatgaaaataatgaaaaagagAGTGAAGCAATGAATCATGATGAAAATGACGATGATGATGATCTACCTCCCATGAGTATTGCGCCGGTCGTCGAGATAAATGAGGACATGCAAGCGAATTCATATAATAGTGATGGAAATGAGGAGGAGTTGGATGAAACTGTTGACCCCAACGATACTGTTGACGGGGAAGAGGAAGATTTAAAAGACCTGGATCCCAACAAAGTATATGTGACAAAAACACAGCGAGACTTCATACTTAAATATAGAGATATTATTGAACAAATCAATACTAAACGTTGTTTGTGTTGTAACAAAGAACATCCACGTAGAAAAGCAGTCATTCAACACTTACAAAAGAATGGTCATAAAGTTCCTAAGCACACCTGCTATAATTGCGTTATCACATTCGGTCATATCGGAGCTTTATTGAGCCACATGAGATCAAACACGTGCACAGATCTGTGGAAAATTATCTACAACGAAAACGGCATAACTGATGATATAGTAGTGGAAGATGAACCCAAAGATGTAAAAGTTCAGTACAAAGACATTCTTAACGCTAGATCGTATGCATGCAAGTTGTGTCCGGCCAAATTTCAGTTAAAACAGTTTATTATGAAGCATGTTCTAGACGTTCACGAGGACGGACAAACCCGCGTCCCTCACGTGTGTGTGCACTGCGGTTTACGCTTTAAAGATAAGACTATAGGGAAAAGACACATTCGTAATGGAGAATGTACCGTATATATTTCATGTGATTTATGTTCtgaaaaatttttgaatttacaaGATTTTAACGACCACGCCATAGCTGTGCACGCGGGTAGTTTTGATCCCGAAAGTCAGAATAAGTGCGTCGACGGCAGACCCACGGACTGTCCCATATGTGGAAAGAAGAACACTAGTTACCCGAATTTGGTGAAACATTTGAAGTGTATACACAACGAGGAGAAGCCTCACCACTGTCAGCATTGCGATTCCAAATTCGAGCAAACTGCTGATCTTAACAAACACATTTATATGGAACATTCTGATAGGACGCTTGGCATGCAGTCTTCTGAGCCCGACATGACACTCGTGAAAGAAGAAGCAGAAGAGTACCACTACTCGTGTACAGAATGCAATTCTATTTTCGAAACAGTCGATGCATGGACTGACCACCAGGTCGCTGAGCACAACCAAGTGGCTCACCATTGTGATCAATGTGAGAAGAAATTCTTACGTCCATCGGAGCTTGCAGAACATAAGAACACGCATTTGAGAGTCAAGTTCTATCCGTGTAGCATTTGTTCAAATTCGTACAGCACACCGCAGAAATTATCTGAACACGTACAGCAGGTTCATCCCGGAGCAGGAAAGACACCTGCAGATTCAGAATTCTTCTGTGACATTTGCATAAGATCGTTTAAGAGCCGTCAAGCTTATTCTAATCATATGCGTATCCATGCCAAAGTGCCTACAACTAATAGAAAGCCTGGAGAAAATAAAGGTTTTGCCCCGCAAATTGTAGGGAAACCGATACGCCAGTTTGCTATGCAACCTGGTTTTAGTCCATACGTTCCAAATGCTCCTTATTGCTGTGATATTTGTGGAAAAGGATTTATgcacaagaaaaatatatggaaacaTAAAAAGGTGCTACACGCCGATCTTCTCGCTGACAGAAACGATAGCGAGGAGAACACCATGCAAGCATCTACTGAAGAAGATGAATACAACATTGATGAAAATGGCGCTATTTTATCGACTCCGCAATTTAATAGTTTCAATTTTACCAATTTGTCGAACAACATGCAGCAGACCTCTCAAGATGCCTTACCTTACTCTTGTGAATTATGCTACAAGCGATTCCCTATGAAAGCAAGTCTGTGGAAACATAAACGGGCAAAGCACGGAATCAGTGCCAGTGCTGGAAGTAGTTCAGAAGCTCAAACTCAACCTAACGAAGGCTCGAGATCTAGCTGTACCATATGTAAAATAACGTTCACAGACAAAAAGTCCTATTACCGTCATAGAAAGAACATCCACAAATCATCGGCTCAGATGTGTAAAATATGTGGGAAGCCACTTAACTCGACTTTAGAACTTTATGAGCATCTGAAGGCGGCGCACTCTCGAGAACTACTAGGCTATAATGCAAATCAAAGTTCCAGTAAATCACAAGATGTGAGTCAAGACATGGACGTAGAGTATGACGGCGATCAGGACTCCGTCGACCCCAGTATCGATTACCAGGCGCGATACCCTTGCGATAAATGTGGAAAACAATTTGTAGGACTCTTAGCCTTACAAAATCATCAGTGCATCAACCAGGTGCAAAACCAACCACAAACGTTCGACTGTGAAATATGTCACAAGAGTTACACTTCCATAGCCGCCCTGAAAAGCCACCGAGGGTGGCACTTGCGATCGCCCGACGGCAAGGCCGCCGCGAACAACTCGGGACTTTGGATGCCTCAAAATAAAGTAACGAGCAAAGTCAGCAAACACGAAGTCGTGGAGATGCCCCAAAACACACGCTCGTCGACCTCCGCCAGCCTCGCCAAAAGACGGTTACCGCCCGAGGTGGAAGTGACCGTGGTGAACCCGAATAAAAAATTACGATCCGACGACTCTATAGAAATGGACTACCAGAATAACTTGTCCGGCGGGCCAGAAGACAGGTACTGCAACATATGCGACAAAGAGTTCACCAAGCGAGCCGCGTACCAGCGCCACATGGACGAAGTTCACCAACCGAATTCCGTGTTCTGCCCGGTCTGCGACAAGTCCTTCACTCGGAAATCTACCTTAATAGTGCACATGAAGAAACACTACGAGGGCGGAGAGGGCAGCTCCACGCAGATGGACGAGGACGTGCACGCGTGCGAGGTGTGCGGCGCGCAGTTCGACGGCGCGAAGGCGTTGAACTCCCACCGAGCGATGGAGCACGGCGAGGAGTCCGGGGAGTCCGAGGAGGAGGGGGGCGCCGCGCCGCCCGGGGAGTTCACGTGCGGGCAGTGCGGCGACGGCGTGGCGACCCCGCGCGACCTCATCGCGCACCGCACCATGCACTCCACGCCCACCAAGTTCTTCTGCAACATATGCAAGGTTTACTTCGCGCGGGCGCTGGACCTGTCGTCGCACACGCGCGCGAGGCACTCCGACAACGAAAAAGTCTTCTTCCCGTGCGCCATGTGCGACCGCTTCTATTTGAACAAGAAGAGTTTGCAGAGACACATCGAGATGGCCCACTGA
- Protein Sequence
- MNVNYDRVCRLCLSSRCELLPIFPTTSSDESEPPVLASKIKDCVSVQISENDDLPTNVCRKCMDNVNNWHIFKSICERTQNKLQSLLNKENNLLEEVKIKNEPMSDEAYDDGVVIDGSYPDIENAGSSNKIQPEGPPILASLGLTPRSDKKYIDPRMDWHRVHAILDMVQEDEVIDSLQSMEECDVIHQSDHNSESETELNNDFLGDFTDCKDGYICKNKRVLAKNPKISSVDTITKVKQVVNMRKRNHTVKKHCPQPRSAWQLFFTDDILDLIVTSTNEKITKYSIKKADKTNAREVRTLIGILYYHGIMRPTHQKFSDLWHNEYGAPCVRKAMQLERFKFLLQNISFDNEDDDSIVQFDVMKRMRKLFEIFALNCRTSLEVGNLVVIDEVILPVHGPCPFRYSIKGKNLKNGLKLVMLVDPTSFYVTNLDVITDPYFGSDEIVSKLVQHLAGTGRTVIMDSWFTSNSLMQRLHSEYKLYSIGALSPSNELVPPLFLTRYRSKKIFMNGFLDNDACLTSFVNENSNVVNILSNDPKYYKRAHSSHTSAVSLYKKYQSAVEVIDVLMHYYTAMQHTNDWTLSLFFMLLNIASVNAQVLWSSDNVNTVVQRRGMESEKDEDFEEEDEQELLEPHSYTNVPNMPEVSITVMRPSGETLHARQGIQQLASKDCLVCGRSYRYSHNARRHELTAHGFDRYTNKVTNLKSRAHMQPKFRPNPFNPKARLMPNHISHKMQYHPKSMPNKMIPHTVVAQPKPIPIRTAKTLQNNLPYPLRIKALKDLQIKKKEPQILKTLLTSKPEVLVSEPEIINSGPESPETLISEPEIASFQVETILSEPDTFINTHPDDEEDENNHGPNYDTVDMDSENEIEIARQQENENHDDGEENRLEIDADENTQDENNMEENHDETEKEHHDDNGDNQDVEAENNLDGDTNYDNAKENEYENNEKESEAMNHDENDDDDDLPPMSIAPVVEINEDMQANSYNSDGNEEELDETVDPNDTVDGEEEDLKDLDPNKVYVTKTQRDFILKYRDIIEQINTKRCLCCNKEHPRRKAVIQHLQKNGHKVPKHTCYNCVITFGHIGALLSHMRSNTCTDLWKIIYNENGITDDIVVEDEPKDVKVQYKDILNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQTRVPHVCVHCGLRFKDKTIGKRHIRNGECTVYISCDLCSEKFLNLQDFNDHAIAVHAGSFDPESQNKCVDGRPTDCPICGKKNTSYPNLVKHLKCIHNEEKPHHCQHCDSKFEQTADLNKHIYMEHSDRTLGMQSSEPDMTLVKEEAEEYHYSCTECNSIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCSICSNSYSTPQKLSEHVQQVHPGAGKTPADSEFFCDICIRSFKSRQAYSNHMRIHAKVPTTNRKPGENKGFAPQIVGKPIRQFAMQPGFSPYVPNAPYCCDICGKGFMHKKNIWKHKKVLHADLLADRNDSEENTMQASTEEDEYNIDENGAILSTPQFNSFNFTNLSNNMQQTSQDALPYSCELCYKRFPMKASLWKHKRAKHGISASAGSSSEAQTQPNEGSRSSCTICKITFTDKKSYYRHRKNIHKSSAQMCKICGKPLNSTLELYEHLKAAHSRELLGYNANQSSSKSQDVSQDMDVEYDGDQDSVDPSIDYQARYPCDKCGKQFVGLLALQNHQCINQVQNQPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNSGLWMPQNKVTSKVSKHEVVEMPQNTRSSTSASLAKRRLPPEVEVTVVNPNKKLRSDDSIEMDYQNNLSGGPEDRYCNICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLIVHMKKHYEGGEGSSTQMDEDVHACEVCGAQFDGAKALNSHRAMEHGEESGESEEEGGAAPPGEFTCGQCGDGVATPRDLIAHRTMHSTPTKFFCNICKVYFARALDLSSHTRARHSDNEKVFFPCAMCDRFYLNKKSLQRHIEMAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00621400;
- 90% Identity
- -
- 80% Identity
- -