Pdid011596.1
Basic Information
- Insect
- Philaethria dido
- Gene Symbol
- Prdm13
- Assembly
- GCA_033558755.1
- Location
- JAKGSA010000586.1:35362-36675[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.26 7.6e+02 0.6 0.0 14 26 10 22 6 39 0.70 2 8 7.6e-05 0.22 11.9 2.8 14 40 168 191 161 194 0.89 3 8 0.023 68 4.0 0.2 19 39 201 218 199 226 0.82 4 8 0.0004 1.2 9.6 2.8 17 43 227 250 219 251 0.84 5 8 0.00029 0.86 10.1 2.1 4 41 243 278 240 280 0.82 6 8 0.7 2.1e+03 -0.8 0.1 19 29 287 297 283 303 0.79 7 8 0.057 1.7e+02 2.7 0.4 18 41 348 368 335 370 0.78 8 8 7.6e-05 0.22 11.9 2.1 15 36 372 399 367 403 0.82
Sequence Information
- Coding Sequence
- ATGGAGTTTACTAGTTTACTAGTACCtttaacgaaaaatatatgTCGAACTTGCTTAGGAGAATTTGACTCGAGAGATCCTACTATGTTCATGAATATACAAGATTTAATTGAACATGAAATGAACAAAATTAAACTGATTGATATATTAGTTTTTCTAAATTGTTTAGAGAATAATGATGAGGATAACTGGCCACAAGGAATGTGTGCATCATGTGTTTCTACAGCTTTGCTAGCATATAATTTTAAGCTTAGTTGTTTAAAAGCTAATGTCACCCTTTCACAGATTTTTACAGTACAATCAACATCTATTAACCCACAAAGATCAGATGCTGATCCTATTGATATTAATGTTGTTTATCAAGACCATGAATATGATGTTCCTTTATACAATCATACAGCCATTGACTTTCGACCAGATGTACCTGAAAATAAAGAGCTTACACCTTTGCCACCTGTTACAGAAATTACCTCAACAGAAAGACTGCACCGAAAAGAaggagataaaaaatatacatgtaatATTTGCTCTAAATCTTTCACTAGAATACATACCTTAAGATACCACATGGCTAAGCATGATGAATTTCGTCAATTTCTCTGTCCTAAATGTGGTAAAAGTTTTCACACAGCCAGTGGCTTGAGACAACATTTGCTTTCTCATATTGAagtaaatcaatttaaatgtgGATTTTGTCATAAAACTTATAAATCTAGACAATCATTAAAAGAGCATTTTCGTGTTGCACATTCAAGTAATAGCAAATTATTTGTTTGCATAACATGTGGGAAAAGATTTACTGCAAAATCAACATTGATGATGCATATTAAGAGTCATAAAGGCTTAAAAGAATTTGCTTGCTCAGAATGTCCAAAAACATACACAAGGGCCACCTATTTAAGAGCCCACAAATTACTTCATCTGGGCCAAGAAAAACCAAAGCCATTTACTTGTGTCTATAAAGAATGTGACAGAAGTTTTGCCACAAAACATTCCTTAGTAGTGCACATTGCTCATTCACATACAACAGAGAGGCCACACAAATGTGAGGTTTGCTTTAAGGGATTTGCTACTTCTTCTGGTTTAAAGGTTCACATGGAATCACATATGAATAAAGAGgtgtattgtaatatttgtaataaaaagctAGCCAACAGAAGGGTATTGCTAAAACATATGAAAactcacaatttaaaaaataatatggaaaaTGAAACAATTGTTGACTGTTAA
- Protein Sequence
- MEFTSLLVPLTKNICRTCLGEFDSRDPTMFMNIQDLIEHEMNKIKLIDILVFLNCLENNDEDNWPQGMCASCVSTALLAYNFKLSCLKANVTLSQIFTVQSTSINPQRSDADPIDINVVYQDHEYDVPLYNHTAIDFRPDVPENKELTPLPPVTEITSTERLHRKEGDKKYTCNICSKSFTRIHTLRYHMAKHDEFRQFLCPKCGKSFHTASGLRQHLLSHIEVNQFKCGFCHKTYKSRQSLKEHFRVAHSSNSKLFVCITCGKRFTAKSTLMMHIKSHKGLKEFACSECPKTYTRATYLRAHKLLHLGQEKPKPFTCVYKECDRSFATKHSLVVHIAHSHTTERPHKCEVCFKGFATSSGLKVHMESHMNKEVYCNICNKKLANRRVLLKHMKTHNLKNNMENETIVDC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01080113;
- 90% Identity
- iTF_01182081;
- 80% Identity
- iTF_01182081;