Pcor010733.1
Basic Information
- Insect
- Pherbina coryleti
- Gene Symbol
- -
- Assembly
- GCA_943735905.1
- Location
- CALSEP010000326.1:133851-138509[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0022 0.36 12.6 0.2 2 23 365 387 364 387 0.93 2 9 0.016 2.6 9.9 4.6 2 23 508 530 508 530 0.91 3 9 0.0024 0.38 12.5 0.6 3 23 634 655 632 655 0.95 4 9 0.0059 0.95 11.2 1.4 3 23 940 961 939 961 0.97 5 9 0.12 19 7.1 0.2 3 23 1012 1033 1010 1033 0.88 6 9 0.012 1.9 10.3 3.6 2 23 1071 1093 1070 1093 0.96 7 9 0.11 19 7.2 4.2 2 23 1107 1129 1106 1129 0.92 8 9 8.2e-05 0.013 17.1 0.2 3 23 1208 1229 1207 1229 0.96 9 9 0.11 18 7.2 1.4 1 23 1316 1338 1316 1338 0.98
Sequence Information
- Coding Sequence
- ATGGCTGCGTCTATCTATGCAACCCCACCGCCAGATTTAAGTAGTGAGGATACCGCACTCTCCGACGTATCAAATTCATCCATAAACcataacaacaacaacaacaacaacaatcacaggaaccgtagaaactccagcaatacacagtcaccagattccagcgaagcagcatcagcagccaaaaaatcgaaacgtttgattgctgatgttttagtggatgtgcctagtcaacagcaacatcaacaacaaacacaaccacaacaacatcaacaacaacaataccaggagccagcaacatccgcgaatatgggaagcagtacaaatgcagcaaaagcaacaacggcaaccagtgatgcggataccaCGACACAGAGtgctaacgcagcaattgctgctgttgccgccgcggctaatgcagctatgcagctgcagctgttAGAAGCCATCAATGATGCAGCTAAAAAGCGGCGTAAACAAAACAATCCTATACGTTTGGGCGGACTCAATTTAACAGGCGATGCAGCAGTTGCGGCGGATAATGTAGGCGCAATTGGATCGGCAATGGAAATACGAACAGCAACAGAAGCGGGGAGTGGTACTGAAGAAGTAAGCAGTACTGAGCTGCTGCTGCTGGAAGGCACAAACTTGgacgagggcaccattgactatgaagagaagttgtcgaaaatgtttctgccgaagtcgatggagcaattaaaggaaacatttgaaatgctgcagcaacaacaacatcaacagcaacaacaacagcaacaacaacagcaacaacaacagcaacaacagcaacagcaacagcaacagcaacagcaacagcaacagcaacaacaacaccaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacagcaacaacaattaaacaacatatcaacagctacgctcatcaatacaaaggaagaaagcaacgaacccgtcgctgatcacagcatagcaacctcaaacgatctgcaacacaaTGATGCACAAGCCAAAGATGCGCAGACGCCACAGCTAGAAACAGAAAGTATGGAAAATCCTTATCAAACTTACTGTAAAGAGTGTGGTGAAAACTTTGAAACCGAGTTCAAGCTTAGCCTACATATGTTGGCCGAACACGCAGCCGATAATGCGGCCAGTCAGCACGATGTAGCAAGTAACAGAGATCAGTTGACGCCATACGACATACTCGCCTCAGTAAAGGTGAAAATGGAGCGCCCAGACTACGATAGCCAATCACCTCAGCCCGCTGCGCCAAGTGTCAATGAACCTCAACCGATGCTGCCAAATGGCAAGGATCAACAGCAGTGGCTCAGTCAAATGCCTGGTAGCATGGGCTTCCCACACTTTCCCCCAGAAGCAGCCGCCGCTGCTGCTCTTTCCGCTAGCGGCTACTTGCCACTACTTGGTGGACTGCCCGGATTTCCAGGTGTTGATGGTCTCAATCGGCCGCCTTTGCGCATTTTCAACCCCGAAGCTTACTGCGATCTGTGCAACAAAGAATTTTGCAACAAGTACTTTCTAAAGACACACAAGGCCAACAAACATGGGATATACGACCCAGCaaatagcggctcaactgagtcatctgggagcaattcaatgagtcaaatgtttcaactacaaatgcagcaacagcatcagctggtgcagcaacaacaacagctacaacagcagcagcaaaagagtctggatcaacaacaacaaatgcaggctgcagctgaggctcaagctaagcaacagcaacatttcctacagcaacaaataacacaacaagcaacacaggcacaattaaatattccacagcaacagcagcagcagccacaaATAACGCCGCCTGCTCCACCGCCAATTTTTTGTGAGATTTGTTCAAAGCGTTTCACCAACGTTTTTGCAATGCGTCGTCATCGCGCCAAAGCGCACGAGCAGCGAACCAGCCCCAACGAGCAACTTTGCAAGCCCGAACCAGCAGCAGCAACAACACAAAAGCCTGAAAGTCCAAAAACTACCGATGCTGCTACCAAAATCTTTCAAATGCCGGAAGGTTTTCGACAAGATTTTACGCTGGAGCAGGAAGAAGTATCGTTCACTCCTCAACCACGCAAACTTTCGCCGCAGTCACAACAACAGGCACGCGATGCTAACTTTTCGCACGATAAGCTAAAGCGGCTTGGCGTGGTCAATCCCGAAGCTTTCTGTGAGCTTTGCTGCAAGGAATACTGCAACAAGTATTTCTTGCGCACGCATAAATGGAAACGACACGGTATTTTTGTGCCACCCGAAGAAGTCAAAGAGGAGATATTGGCACAGAAAATGCAGTCGGCAGCGTGGCCCTTCATAAACATGCCAGCTATGCCATCCGGCATGCCGTTGAATCTTATGATGGCCAATCAGGAGTCACGAGTTCTGGCTGCACGTGGCATGCTTGCAGCAGCGGTAGCCACTAAGCAACTCGATTCGGATGCGACACAACAAATGGCTAAACGCGTTAAGTTAGAGGCACCCGAAGAAGACGAGCAACATCCACACGATAGTCTTGAGAATCAGGAGAATAAATCGGAAAATCTACGCGCTGAAGAACCCCGACGTCAGCAGCAGCAAATAACAAGCAGCTCCACCTCGCCGGAACCACAAAAAATGCTGCAAGACTCTTTAACAAATGCTTTCAATTTACCCGCTGGCAGTCCAGATGCCGCTGTTGGCTTACAGAATCTACAGAAACTGCAATCCATGATACAGCAGCTCAACGATCTTAACGGCAAGCGACCAGTTGCTTGTCACCTGTGCGGTAAGGAAATGGAAAATCAGTATTCGCTGCATGCACACTTGATGACCGAGCATGCTGTGCCACCTGGCATGCCAACGGAAACCAATGCTTCTGCATTTAGCTTTCAACAGCATCTTTTACAGCAACAGCAGCAACAAGCTTTGAAATTATCGCCAACAAGCTCACCACATGGCGGCATGCCACCTAACCCCGGTGACTTGCGCTGCATACAGTGCGATCGTGAGTTTGCAACAACGCAAGAATTCAAGCAACATATCGCCGAGGTGCATCTGCTGCCAGGCAGTCCACTGCGTGACGGCTTTGTCACGCCCGAACGGCCCATTAATACGCAAGCAGGTGCTGGCTCACGCCCACCTTACACCATGACGCCCACTAGTAGCTACTGCGAGATCTGCAACAAAGAGCTCTGTAACAAATACTTTATGAAGACGCACATGCAACGCATGCATGGCATTGAAATAGAGAATGGTGCTCAAATAGGCGGCGTTGTTTGCAACATCTGCAACAAGGAGCTTTGCAGCAAATACTTCTTGCGTGTACACAAGCACAATACGCACGGTATTatagaagaaggagcaccactgccgcagccacgtcaaaatgggctcggctatgaagcgcagcagcaacaacagcagcagcagcaacaacaacaacagcagcaacatcagcagcagttaatggagagcgagttggcacgtggcttgactatgagtccatttggcggcagtgatgcacccaaagctgaacctgccgatgcacgctacctgcaacagcaTTATAATGAAGCTTGTCCGTTGTGCAGTCGTCGCTTCCGTAGCCCAAAATGGCTACGCGCGCACCTTATGAGCGATCACGGAGCCGCAGGAGCTGAAAAATTGCGCGAGCTGGACTTGCAATATGGGAACATAAGCAAGCCTTCGAGTCCATCGCTTAAAATACCGAACGGAACTGCGGCTGGCGTTAACTTGACAGGCACGAGCCCGGTTAATCTTGCTCAGGCGCTGCAGTCACTTAACTCCCAGCATTTGCTTGGAAACATTCCCAAATCGGCTTTTCCCGGGATGTTTGGCTCCGTAGCCGATCAGGCATTACAGTCGCCACGTTTCAAGGAATATCAGTGCTCCATGTGCACCTTTACCACACCCTACTATGCATTCCTGTTCATCCACGAGCGCTCACATTCCATACTCAATACAACGGCTAGCGGGAGCGTTTCACCTACACCCGAACACCAGCAGCAGCAGGCAGCCTCAAATGATGAAAGTCTACCCTCAACAACTTTTGCAACAAAGTCAGATATCGTCAAGATCGAGCAGTCTACCATTTCGCCGCAGTCAGAGCAAATTACAAAAAAACTTCCAAGAGAAACGAGTGTGGAAAGCGTAAGTTTTGAGGCTACGGATCTCTCAAAACGCACAGCGACGCCCATAGCAGTGGCAAATACAGCGAGTAACGGTTCCAATGAGCCACAGGCGCGTTCTGCAGCCACCTCACCCATTGCAATGACGCCACCGAGCTTCAATGTTTTGCCAACGCAGGATATTATTAAACAGATCGCTCAAAGCTGTGGCAAACCAGCTTGTTACGCGGTGCCACATCAGCAACAGGGACAGCAGGCGACTGAAAGTGTCACTCAGGAAATGCAGGCCTTCATCATGGAGGAACATCCCACAGTTCAGGTCAATGATGCAGGTAATACAGGTAATGCTGAAGGTGTTGATGGTGAGCGCAGCACTAACAGGTTTGTGCCCGCTATTATTTATTTGCCAGTCAGAGAACGTATCTCAGGTCCGCTTACGGTGTCCTTTACACTAACTCCAGCCTAG
- Protein Sequence
- MAASIYATPPPDLSSEDTALSDVSNSSINHNNNNNNNNHRNRRNSSNTQSPDSSEAASAAKKSKRLIADVLVDVPSQQQHQQQTQPQQHQQQQYQEPATSANMGSSTNAAKATTATSDADTTTQSANAAIAAVAAAANAAMQLQLLEAINDAAKKRRKQNNPIRLGGLNLTGDAAVAADNVGAIGSAMEIRTATEAGSGTEEVSSTELLLLEGTNLDEGTIDYEEKLSKMFLPKSMEQLKETFEMLQQQQHQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHQQQQQQQQQQQQQQQQQQQQQQQLNNISTATLINTKEESNEPVADHSIATSNDLQHNDAQAKDAQTPQLETESMENPYQTYCKECGENFETEFKLSLHMLAEHAADNAASQHDVASNRDQLTPYDILASVKVKMERPDYDSQSPQPAAPSVNEPQPMLPNGKDQQQWLSQMPGSMGFPHFPPEAAAAAALSASGYLPLLGGLPGFPGVDGLNRPPLRIFNPEAYCDLCNKEFCNKYFLKTHKANKHGIYDPANSGSTESSGSNSMSQMFQLQMQQQHQLVQQQQQLQQQQQKSLDQQQQMQAAAEAQAKQQQHFLQQQITQQATQAQLNIPQQQQQQPQITPPAPPPIFCEICSKRFTNVFAMRRHRAKAHEQRTSPNEQLCKPEPAAATTQKPESPKTTDAATKIFQMPEGFRQDFTLEQEEVSFTPQPRKLSPQSQQQARDANFSHDKLKRLGVVNPEAFCELCCKEYCNKYFLRTHKWKRHGIFVPPEEVKEEILAQKMQSAAWPFINMPAMPSGMPLNLMMANQESRVLAARGMLAAAVATKQLDSDATQQMAKRVKLEAPEEDEQHPHDSLENQENKSENLRAEEPRRQQQQITSSSTSPEPQKMLQDSLTNAFNLPAGSPDAAVGLQNLQKLQSMIQQLNDLNGKRPVACHLCGKEMENQYSLHAHLMTEHAVPPGMPTETNASAFSFQQHLLQQQQQQALKLSPTSSPHGGMPPNPGDLRCIQCDREFATTQEFKQHIAEVHLLPGSPLRDGFVTPERPINTQAGAGSRPPYTMTPTSSYCEICNKELCNKYFMKTHMQRMHGIEIENGAQIGGVVCNICNKELCSKYFLRVHKHNTHGIIEEGAPLPQPRQNGLGYEAQQQQQQQQQQQQQQQHQQQLMESELARGLTMSPFGGSDAPKAEPADARYLQQHYNEACPLCSRRFRSPKWLRAHLMSDHGAAGAEKLRELDLQYGNISKPSSPSLKIPNGTAAGVNLTGTSPVNLAQALQSLNSQHLLGNIPKSAFPGMFGSVADQALQSPRFKEYQCSMCTFTTPYYAFLFIHERSHSILNTTASGSVSPTPEHQQQQAASNDESLPSTTFATKSDIVKIEQSTISPQSEQITKKLPRETSVESVSFEATDLSKRTATPIAVANTASNGSNEPQARSAATSPIAMTPPSFNVLPTQDIIKQIAQSCGKPACYAVPHQQQGQQATESVTQEMQAFIMEEHPTVQVNDAGNTGNAEGVDGERSTNRFVPAIIYLPVRERISGPLTVSFTLTPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01415406;
- 90% Identity
- -
- 80% Identity
- -