Pcor031551.1
Basic Information
- Insect
- Pherbina coryleti
- Gene Symbol
- -
- Assembly
- GCA_943735905.1
- Location
- CALSEP010001618.1:70035-73709[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 3.4 5.5e+02 2.6 0.9 1 23 123 146 123 146 0.92 2 13 0.0099 1.6 10.5 1.4 2 23 195 217 195 217 0.97 3 13 0.0038 0.62 11.8 0.0 1 23 336 359 336 359 0.93 4 13 0.053 8.6 8.2 2.2 2 23 410 432 409 432 0.96 5 13 0.00028 0.046 15.4 1.2 1 23 481 504 481 505 0.93 6 13 0.055 8.9 8.2 3.6 2 23 555 577 554 577 0.96 7 13 1.4e-05 0.0022 19.5 0.5 1 23 656 679 656 679 0.95 8 13 0.0071 1.2 11.0 0.4 1 23 775 798 775 798 0.93 9 13 0.14 22 6.9 4.9 2 23 848 870 847 870 0.96 10 13 0.0019 0.3 12.8 2.2 1 23 942 965 942 965 0.91 11 13 0.38 63 5.5 1.3 1 21 1017 1037 1017 1038 0.95 12 13 0.0016 0.26 13.0 0.3 2 23 1097 1119 1096 1119 0.94 13 13 0.23 37 6.2 2.2 2 23 1169 1191 1168 1191 0.95
Sequence Information
- Coding Sequence
- ATGGACGATATTGAACCCTGGAACATGTTCAGCAGTGACTTTGTTGCTGAAGAAACTGAAGAGCTGCTTACCGACGAGCTAGTGGCAGAATATGGTCAGAACGAAAATCAGATGCCAGCAGTGAAACAGGAAATACCTGAAAATGATAACGACGTCGATGACGATTTTAATGGGCAGATCAAGGCAGAGAATGAAACCAGCAACTATAGTCGGACGGAGGAGGAAGATCCCAATGACAATGAATTATTTAATTTTTCTTTTGAACCTCAGATCGATACCAGGTCAGTACATCGACCGCCACATGAAGAGGAGTTGGTAGGGAATGACCGCTCGCTACAAAGGATCGATTATGATTGTGCTGTTATATTTGTGTGTCCAGCTTGCGGCTTCGAGATGGACTCACACGAGAAGTGGAAGCGACACATTGACCATGAACACAAGTACTCAACACGCCGTGGTCTCAACTTTGTGCAGATGGATAAGTTGTACCATCAGTGCTTGGAATGCAAGCGCAAAATAGCAATGCATAGCATGGAAAACCTGCTCAAGCATAAGTTTACACATCTGCCATATAAGCGTGCAAAGTGTAGAATTTGTCAGAAACAGTACAAGTACCGACAGGATATAATGGTACATTTACGCATGAGTCACCGTGACGATTTGTTATCCATCGCTAAGACAGTTAATGCTGGACGTCAAGCAATGCGCAATGAAAACCAATTGCCGCGTCAACCAGTAAATTTTGAAATAAAAAACATACAGGAAAATGCTATTGATATATTTGAGAACACAATCGATGGCGTGGAAGTGAAGAGTGAGGCAATTGATGATGATGATGAGGATGTAGATGAGCACCCAAGATCTTCAGGTGCTCCACAAAATGTTAGCACATTCGAAGAATCCCTTAGTCGCAGCTCATCACACCAATCGGATATATCAATGCGTCAGCGCACGGCCTCAGGTGTGGCTAATAAGGAAGAACTTTGCGAAAAGTTTTACATACAATACATCTGCCCGCAGTGCGGCGCAGAATTTGGCTCTCAGCCACAATGGCGTCAGCACATTGAGTTTGTTCATAATTTCGGCTCACGCTCCGGCTTAAACTTCAAGGAGGTTAACATGAAGCAAAATGCCCAATGTTTGGAATGTGACAAGATCATCAACATCAATGTTATAAGAAATCTTCAAATGCACAAGTTTGCGCATCTTTCTTTCAAGTCTTGGCTACGTTGCAAGCTTTGCTTCCGCACCTTTGTGGGTCATAAAGAAATCGTGAAGCATCTGATGACACAACATCGCTTAGGCGAAGAGATTGACAATACCTCCGATAGTCAAGATGCACGTTATGACTGCGATGAGGAGCCTGATAACGGCAATGACTCCCAACAATCGGAGCAGCCGCGCGAAGAGAAAAATGACCAATTTGAGCCACATATCGACTATTTGTGCCCACAGTGTGGCAAGGAATTTTTTGACAAGCGTCTCTGGCGCAAGCACATCGTGAAGGCGCACCATTTAACCGACATGAAAGTGCTTAATTTCAAAGTTATCAACGAACGTCAGGTAATCTGTTTGGAATGCAGCAAGATCATTACCAATGCTTATGGAGTACAAAATGCACAGCAGCATAAATTCACGCATCTACCCTGGAAGTCGTTTGTTCGCTGCCGTCTCTGCTGCAAGTCCTACACAGATCGCAAGGGCCTGGTGAAGCATCTTAGAAGTAGACATCTACTGGGCGACGAGCCGCTACCGTCACAAACTACTTCCTTTTCACCTTCGCTGCAGCAAACTCAGTCGCAGCCTGTGCAGAAAGAAATTGTCAAACATGCAGACTTCACATTCGAAATTAAGTATTTAGACGATGATGATGATGATGGCGATGACAACGATGTACTTGATGACGACACACCTGTGCCGGAATTAAACTTCAGCTCATCTTTCAGCCAGTTTGGCGGTGGATCGTTCAAGTGTAAGCAATGCAGCTTAAGCTTTATATCACAAAGTGAGCTACAGATACACATAAATGATGAACACGAGTTTTTGGATTTTAACAATTTGCGCCCACTACCAGAGGGTCCACGCACAAGCTATCACCGCACTCAAGCTGCAAGTGCTGATGGTACAAAGTCTACACATAAGGAGAACAAACCTGCGCAAAAACCCAGACATGAACGTGATGACGAGGAAGACCAACAAAGCGGCAGTCGCGATGATTTCTTGAATTCAAGTGACTCAAATAACGAGCTACTTGTGCCAACCGGCGATGAAGACATTAGTTCCTGTTCACAGGAGGCCGCAAGCATTGAAAGAAATTTCTGTTATCTTTGTCCTAATTGTGGTTTTGAGTGCGCAACCCAAATGCTCTGGCGTCGTCACATCAACGATGTGCATAATTACGACAAGCGCAATGCACTCAACTTCCGTCAAATAGACAAATTTCGCTATCAATGCCTACAATGCATGGATATTGTAAGTGGGTCTAAATTGAAGGGTTTGCAAGATCATAAATTTCGCCATTTGGCTTATAGATTATATATAAAGTGTCTGTTATGTAGCACTTGCTACAATCACAAGCCGAACATGATGAGTCACCTGCGGCAGAGACACAATATAATTGATGCACGCACCTCACTTGATGCGCCTTATGAACCCACCACACCACACGCCATGCTGCCAAAGGGCTTCGCAAATAAACCCTCACCCACAATAAGCCCAGCCATTGCTTCCTCATCATCATCACTCTCCAAATCAGCCGCCCCTAAGAACTCTGCTGATGATTCACTCAGCTACCACAATGCTGTCGATCATGAATCTATCACATATTTTTGCCCTAAGTGCAATGAGAATTTCACAACACATGTCTATTGGCGCAAGCACATTGTAGAGAAACATAACTTAAACAATAGACAAGGCTTAAATTTTCGTCAAATCGATGAGCATCACTTTTTATGCCTCCAATGTTACAAACGCGTCACCGTGACTCACACCAAAGGCGCTATTGGTCAGCTACAGTCGCATAAGTTCCGCCATTTACCATTTAAGTCATTTAAATGCAATGCCTGCAATGGTCTGTTTGTGCGAAAACAAATGTTTTTTAAACATCTTAATAAGGAGACCAATTTATGCGACAGTAAAATGTGCGAAGATGTGCCAGAAGAGGAAAATACAACGCCGACGCAGAAACCTCAACCTCAGCCTCAGCCTCAGATATCCAGTATGACTGCCAACGAAAATAATGCCGTTACTCCATCATATGAAAGCAATTTTCAGGATTGCTTTATACTCATTTGTCCCCAGTGCGGTCTACAATTTGACTCCCAGCGACAATGGCGTGAGCATATTAATCACGCACACGACTTTATTAAGCGAGAAACTTTAAATTTTAAAAAGGTCAACTCAAATCTACACGAGTGTCAGCAGTGCTTTGAGCATGTTAATGGCAATAAATTGCGTGACTTGCAGATACATAAATTCAAGCATTTGCCATTCGGAACATACATACAATGTAGATTTTGTAACGCCTCATACTCACACATGCGTAATATACAGGATCATTTGAAGCTCAAGCATCGCAACATGCTGGAGAAAAACAATGAATCTTTCGATGAGATCAATTTTCCCAAAGAAGAAGCGGATGCTGCTGAGCCGGATGAACCTTTTCTATTGGATTAA
- Protein Sequence
- MDDIEPWNMFSSDFVAEETEELLTDELVAEYGQNENQMPAVKQEIPENDNDVDDDFNGQIKAENETSNYSRTEEEDPNDNELFNFSFEPQIDTRSVHRPPHEEELVGNDRSLQRIDYDCAVIFVCPACGFEMDSHEKWKRHIDHEHKYSTRRGLNFVQMDKLYHQCLECKRKIAMHSMENLLKHKFTHLPYKRAKCRICQKQYKYRQDIMVHLRMSHRDDLLSIAKTVNAGRQAMRNENQLPRQPVNFEIKNIQENAIDIFENTIDGVEVKSEAIDDDDEDVDEHPRSSGAPQNVSTFEESLSRSSSHQSDISMRQRTASGVANKEELCEKFYIQYICPQCGAEFGSQPQWRQHIEFVHNFGSRSGLNFKEVNMKQNAQCLECDKIININVIRNLQMHKFAHLSFKSWLRCKLCFRTFVGHKEIVKHLMTQHRLGEEIDNTSDSQDARYDCDEEPDNGNDSQQSEQPREEKNDQFEPHIDYLCPQCGKEFFDKRLWRKHIVKAHHLTDMKVLNFKVINERQVICLECSKIITNAYGVQNAQQHKFTHLPWKSFVRCRLCCKSYTDRKGLVKHLRSRHLLGDEPLPSQTTSFSPSLQQTQSQPVQKEIVKHADFTFEIKYLDDDDDDGDDNDVLDDDTPVPELNFSSSFSQFGGGSFKCKQCSLSFISQSELQIHINDEHEFLDFNNLRPLPEGPRTSYHRTQAASADGTKSTHKENKPAQKPRHERDDEEDQQSGSRDDFLNSSDSNNELLVPTGDEDISSCSQEAASIERNFCYLCPNCGFECATQMLWRRHINDVHNYDKRNALNFRQIDKFRYQCLQCMDIVSGSKLKGLQDHKFRHLAYRLYIKCLLCSTCYNHKPNMMSHLRQRHNIIDARTSLDAPYEPTTPHAMLPKGFANKPSPTISPAIASSSSSLSKSAAPKNSADDSLSYHNAVDHESITYFCPKCNENFTTHVYWRKHIVEKHNLNNRQGLNFRQIDEHHFLCLQCYKRVTVTHTKGAIGQLQSHKFRHLPFKSFKCNACNGLFVRKQMFFKHLNKETNLCDSKMCEDVPEEENTTPTQKPQPQPQPQISSMTANENNAVTPSYESNFQDCFILICPQCGLQFDSQRQWREHINHAHDFIKRETLNFKKVNSNLHECQQCFEHVNGNKLRDLQIHKFKHLPFGTYIQCRFCNASYSHMRNIQDHLKLKHRNMLEKNNESFDEINFPKEEADAAEPDEPFLLD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01415386;
- 90% Identity
- -
- 80% Identity
- -