Pcor022091.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pherbina coryleti
Gene Symbol
-
Assembly
GCA_943735905.1
Location
CALSEP010000808.1:143671-148561[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 8 1.3e+03 1.4 0.2 1 23 233 256 233 256 0.78
2 9 7.7 1.2e+03 1.4 2.2 2 23 272 294 271 294 0.91
3 9 0.87 1.4e+02 4.4 1.0 3 20 1092 1110 1090 1114 0.92
4 9 4.8e-07 7.8e-05 24.1 2.6 1 23 1150 1172 1150 1172 0.98
5 9 0.00052 0.084 14.6 4.4 1 21 1198 1218 1198 1219 0.95
6 9 8.8e-07 0.00014 23.3 1.0 2 23 1229 1250 1228 1250 0.98
7 9 0.11 17 7.3 3.2 1 23 1256 1278 1256 1278 0.98
8 9 0.0083 1.3 10.8 0.6 1 23 1284 1307 1284 1307 0.96
9 9 0.00076 0.12 14.0 1.4 1 23 1316 1338 1316 1338 0.97

Sequence Information

Coding Sequence
ATGAACGATAGCAATTTTTCCAATGATAGTTATTTTTATTTCCAGGATTTGTCAACTTCACACTTGGTAGAAGCTGAACCATCCAATGGCTTCAACTATTTCAATTCCATAACAAATAGTTTTCATAATCAGCAACAACAACAACAACCACAGCAACAACAACTCGCAGTACATCATCTGCAACACGTTGGTCATGTTCAAACAAATGCTTTGCATTGCAATCTCAACGAAAGCACCAACAATAACCACAATAATAATAGCAGTGGAAATAACAACAGCAATAATAATGGCAACAACAATTTGTTGAACAACAGTCTTCCTTTTGTACAAATACATACAACAGATGTGCATCCGGCGCGTAGTAGTTACGGAAACGTGTTTCGTCGTCAAACTACAAATCAAGAAGAAATCAAATCGGAGCCAATTAAATCAGAAAGCTCCGAAAATAACACCAAAGACAATACAAATACAACGCCAACACCACCCAATGCTCAGGTTAGTGGAAGTGGCCGTAGTAGCAATGCTTCCAATGAACATAGGTCGTCAATTTCTACGAATGGCAATTGTGGCAATGAGGAGCTGACTGAGCTACAAGAACAGCAACTTATGAGCAATGGCAATAAAGTTAGCAAAAACCACGAGAACAACGATACCAACTTGCAGGACCCCAATGTGAACACATTGTTGCCAGCGATTTATAAATGTTCTCAATGTCCATTCATCAGTTTAAGCGAGGCGGGGGTGCAGCAGCATGTCAATACGAGTCATCATGCCAGCAACAATTATTTTCCCACAGAGAATAGAACACGCTTGACATGTCCTGGTTGCACTAACATCTTTTTTGCTCACAACTCCTTTTTTGTGCATCTTTGTGAGGATCACCAAATGTGCTTGGATGAAGCTAATAAACTCTTGCAAGCATTTGAGGAGAACACTCAGCTTCAGCAACAATCCAAGCACTCTGGCGAGGTGCACGCCAAAGAGGTGCAGCCCAAGATATTCTTAAAAAATGTCGCTTGTTTGCGCGATCCTCCACCACGAGTCTTGGAAGAACAATTGCTGCAGCTGAATGATAGCAACTACTTCCAATTGACTGACTTTGAAGATGGCTGTAGTGCATTATTAACAGATGTTGGTGCTACCGAGAATGATTATCTGGGTCTGGTTCCTAATGTTTCGGCGAAAGACCTAACGCTGGACGTTAACGCAAATTTGCCGAAACAACACCAGACCACAACAAAACAAAAAATATCAATTAAGAGTGTTGATGTGCTGCGTGAACCAGCTCTATTGCGACGTGACTTTGAAATGCAGCATTTAAATATACTCAGCGCTGGTGGTGGCATTGACAGTCAGTGTAATGAACATGAATTAACTGAAGTTCTGGAGGAGGACAATCAATATAACTTTACCGCCAACATTGATTTGGAACATAACGATGCAGTAGCTAAGGAATTGAGCGCTTTTGAGAAACCCAGACGTCCAAAGATTTACATAAAAAATGTGGACATTCTTAAGGAACCACTTGTGCTATCCAATAATTTAAATAGTGCTACCGGTGGTTTAGATTTCAATTTTATATCCCAGTCTATGCAGCAACAGAGTTCAGGTAATTTCTTAAGCAACCCCGACGAGGAGGCGGCTACAACACAAGCGCAGGTCTTCGATGGGTCACCGCATCTTTGCAATCCCAACATGGCTGAAACACCGGTGCTTTACGACGGCTCATCAAGCAATACTTTTCTGCAGAACATCGGTGACCTGGACTCATATGCACTATCTCAAAACAACACCAACAATTTTTTGCTCGAGGATCCAAAATATCAGTCTGAGCTTCAAGCAATGAGCACAAATTTGGAAGCAGCATCAGAGCCAGCGCCAATAGTTATCGAATCAACACCACCGCCGTTGCCCACAATGCAAGAACAACATCCAATAGAATTTCAAGCAACAACCACGTCACAGCAAAAACAAAAAATTTTCATTAAAAATGCCGAAATTCTGAAGCAGCCACAATTTCAGGAACATCGGCGAACGCTGCATCTGCGCACAGTGGATGAGTTGAATCTAATGAACAAGACGGAGGTGGAAAATCTTATTGCACCTAATTTGGATGCGTCGCAGAATCAGGACTATGCTGAGAGTAACAACAACAACAACAACAACAACAACAACAACAACAATAACAACATCGGAAATAATCTCAATAACAACAACAACTTGAATGCATCTGCTGAAAATTCCAAAAACTCCGAAGAAACCAGCTCGTATAACAGTTTAAATCTAAAAATCAACGAGGCAGAAGATGCACAAGCTTTGCACAACTGGACAAGCGGCTATTCGTTGGGTGCCGAACTAGATTGCATTATAACGGAGCACACGCAAGGTATTGGAATGACAAGCGATACTGATTTGGCGCTACAAAAACAGCTGTACGATTTGGAAACACCACAAATGTCCGTAATCTCGGTGCTTGACATAGAAGAGTTGACGGATGAGCAAGAAACCTCAACGAGAAACGCTCTAACAGAGTCTCAAGTGACGCAGTTTACACTTAGCGCTCCAGCGTCTGAGCAGCATGATGTTGATTTTACCAATACCCATGCTGTGGAAATGTTGTTAACCAATACAGAACACTTGGAAAACACAAATGTCGCAGAAAGTAGTGAACAGCATGAGACAGGTTCTTGTCCAGCAGCTATGTTGGCCATACCAGACGAGCTTAAGCGTGAGCAGCTTAGCAACATCAATACCTCGGAGTCCTGCACACCAATTAGTGAAAAGTCAGAATTGATTTATGCTTCAACTACAACGTCGCCCGCCTTAAGTGATGCTGAAGCTTTTGCAACAACAGGTCTTAAAGAGAGAGGTGCGCAAGCGATGCCAGCAGTGGTCGTTAATTCACCAAATTCAACCATTCAAAACACGCTGCCTTTAAAACAAGGCTCCACGGCACCCATTGCCCCGGAAAAAGGACGAATTTATGTGGCTGATAATCTTCTAATGGAAGTTGCTGCAGACAAGATTTCCGATGCTGCAGAGCACCCAGTCGCAGTTTCCATAACAGGTGGCACTTCAAATCGCGGACGTCCCTTTGGCTCGAATCGTACAGGCATCACCAAAATCCGTAAACTCTATGGCAATGCGGCCGCCATCGATGTTGGCATGAAATGCAATGTCCAAGGATGTGCCTTCCGCTTTAAAAAGCCCGAAACACTAGACTACCACAAACGCTGTCACACCAGCTCAACAATGTCTTCACAAGCCATGATTTGCCCAGAATGTAAGTCAACTAATTTCTCCAATTGGAACACCTTACATACGCATCTCTGGCGCACGCATCAAGTCGACATGGAGCTGTATAGCTGCGAACTGTGTCAATTCAAGACGCCCATCTATTCTCGCCTTATAAACACGCATTCTAAAATACATTCCGAAGAGCGCAACTATAAATGTGATCAATGCGATAAGGCCTTCAAGAACAGCAAACAGCTAAAGAATCATCGACGCTGGCATCGAAATGCTGTGGCTGTGGCTACGACCGCAACCGCATCCTTAGCGACGAGTACTAATCGTACCGAAGCAACGTTGCATCGTTGCAATGACTGCGGCTCGGCGTTCTCACATCAAAAGACTTTGCGCGAACACATGTGCAAGCAGAACGCTGATGGGCAAAAAGTAATGCGTTGCGAGATATGCGATCGTACTGTTTCTTCCAAATCATCCCTAAAGCTGCATATGCGCACGCATGAAGCAGCGAGTCGCTTCAAGTGCACCGCCTGTGACTATCGCGCAAACGATCACAATGCATTTAGACGTCACAAAATGACACACGAAAAGAGCAAGATGTACATTTGCCCCTTTTGCGACTACAAATCTATACAGAGTGTCGCTTATCAGAAACACTTGCAACAAAAGCATCCCGAGTTGGTTGACAATATTGTGCATAAATGCAGCGAATGCAACTTTGCAACTATTAATCGTTCGTTGCTTACCATTCACATGGTAAAACATAGCAGTACAGAAGATGCCACACAATCCTTGCGTGAGCCAAGAACTAGCAGCGATGCTACAATGCGTTTTGCACACTCTGCGCTGAGCATAGATGGCTTCAACCACAATGAGACTGAAACAAGTGTGCACCAACAGCAACAAAGAAACAAAATAAAAGTAAAAAGCGATCTTGTTTTAACGGATCCCGCAAAATTCTCAAAAAATACAAATTCCAATAGCGTGACTTCCCTGCTCGTGCATTGTTTCGATAATGCTATAACATAA
Protein Sequence
MNDSNFSNDSYFYFQDLSTSHLVEAEPSNGFNYFNSITNSFHNQQQQQQPQQQQLAVHHLQHVGHVQTNALHCNLNESTNNNHNNNSSGNNNSNNNGNNNLLNNSLPFVQIHTTDVHPARSSYGNVFRRQTTNQEEIKSEPIKSESSENNTKDNTNTTPTPPNAQVSGSGRSSNASNEHRSSISTNGNCGNEELTELQEQQLMSNGNKVSKNHENNDTNLQDPNVNTLLPAIYKCSQCPFISLSEAGVQQHVNTSHHASNNYFPTENRTRLTCPGCTNIFFAHNSFFVHLCEDHQMCLDEANKLLQAFEENTQLQQQSKHSGEVHAKEVQPKIFLKNVACLRDPPPRVLEEQLLQLNDSNYFQLTDFEDGCSALLTDVGATENDYLGLVPNVSAKDLTLDVNANLPKQHQTTTKQKISIKSVDVLREPALLRRDFEMQHLNILSAGGGIDSQCNEHELTEVLEEDNQYNFTANIDLEHNDAVAKELSAFEKPRRPKIYIKNVDILKEPLVLSNNLNSATGGLDFNFISQSMQQQSSGNFLSNPDEEAATTQAQVFDGSPHLCNPNMAETPVLYDGSSSNTFLQNIGDLDSYALSQNNTNNFLLEDPKYQSELQAMSTNLEAASEPAPIVIESTPPPLPTMQEQHPIEFQATTTSQQKQKIFIKNAEILKQPQFQEHRRTLHLRTVDELNLMNKTEVENLIAPNLDASQNQDYAESNNNNNNNNNNNNNNNIGNNLNNNNNLNASAENSKNSEETSSYNSLNLKINEAEDAQALHNWTSGYSLGAELDCIITEHTQGIGMTSDTDLALQKQLYDLETPQMSVISVLDIEELTDEQETSTRNALTESQVTQFTLSAPASEQHDVDFTNTHAVEMLLTNTEHLENTNVAESSEQHETGSCPAAMLAIPDELKREQLSNINTSESCTPISEKSELIYASTTTSPALSDAEAFATTGLKERGAQAMPAVVVNSPNSTIQNTLPLKQGSTAPIAPEKGRIYVADNLLMEVAADKISDAAEHPVAVSITGGTSNRGRPFGSNRTGITKIRKLYGNAAAIDVGMKCNVQGCAFRFKKPETLDYHKRCHTSSTMSSQAMICPECKSTNFSNWNTLHTHLWRTHQVDMELYSCELCQFKTPIYSRLINTHSKIHSEERNYKCDQCDKAFKNSKQLKNHRRWHRNAVAVATTATASLATSTNRTEATLHRCNDCGSAFSHQKTLREHMCKQNADGQKVMRCEICDRTVSSKSSLKLHMRTHEAASRFKCTACDYRANDHNAFRRHKMTHEKSKMYICPFCDYKSIQSVAYQKHLQQKHPELVDNIVHKCSECNFATINRSLLTIHMVKHSSTEDATQSLREPRTSSDATMRFAHSALSIDGFNHNETETSVHQQQQRNKIKVKSDLVLTDPAKFSKNTNSNSVTSLLVHCFDNAIT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01415443;
90% Identity
-
80% Identity
-