Basic Information

Insect: Pherbina coryleti
Gene Symbol: RREB1
Assembly: GCA_943735905.1
Location: CALSEP010001323.1:255640-261957[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0085 1.4 10.7 0.7 1 21 265 285 265 287 0.95

2 14 0.00035 0.057 15.1 0.2 1 23 297 319 297 319 0.98

3 14 2.5e-05 0.004 18.7 7.5 1 23 325 347 325 347 0.98

4 14 0.55 90 5.0 3.6 2 19 579 596 579 596 0.97

5 14 0.16 26 6.7 0.5 1 20 636 655 636 657 0.92

6 14 0.0094 1.5 10.6 0.1 1 23 820 842 820 842 0.97

7 14 2e-05 0.0033 19.0 1.2 1 23 852 874 852 874 0.99

8 14 0.00087 0.14 13.8 2.0 1 23 880 903 880 903 0.97

9 14 0.0031 0.51 12.1 2.0 1 23 1259 1282 1259 1282 0.95

10 14 9.1e-05 0.015 16.9 0.3 2 23 1619 1640 1618 1640 0.97

11 14 0.15 25 6.8 6.3 1 23 1646 1669 1646 1669 0.97

12 14 9.1 1.5e+03 1.2 3.8 1 23 1782 1805 1782 1805 0.86

13 14 0.0089 1.4 10.7 0.5 3 23 1859 1879 1857 1879 0.96

14 14 0.0011 0.18 13.5 5.7 1 23 1885 1907 1885 1907 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0085	1.4	10.7	0.7	1	21	265	285	265	287	0.95
2	14	0.00035	0.057	15.1	0.2	1	23	297	319	297	319	0.98
3	14	2.5e-05	0.004	18.7	7.5	1	23	325	347	325	347	0.98
4	14	0.55	90	5.0	3.6	2	19	579	596	579	596	0.97
5	14	0.16	26	6.7	0.5	1	20	636	655	636	657	0.92
6	14	0.0094	1.5	10.6	0.1	1	23	820	842	820	842	0.97
7	14	2e-05	0.0033	19.0	1.2	1	23	852	874	852	874	0.99
8	14	0.00087	0.14	13.8	2.0	1	23	880	903	880	903	0.97
9	14	0.0031	0.51	12.1	2.0	1	23	1259	1282	1259	1282	0.95
10	14	9.1e-05	0.015	16.9	0.3	2	23	1619	1640	1618	1640	0.97
11	14	0.15	25	6.8	6.3	1	23	1646	1669	1646	1669	0.97
12	14	9.1	1.5e+03	1.2	3.8	1	23	1782	1805	1782	1805	0.86
13	14	0.0089	1.4	10.7	0.5	3	23	1859	1879	1857	1879	0.96
14	14	0.0011	0.18	13.5	5.7	1	23	1885	1907	1885	1907	0.99

Sequence Information

Coding Sequence: ATGCTTAAGACAGCCACTAACAACACGACAGCCACAACCCAGCTAACAACGAACACTACAGCGAACCAAACACAACAACACACTGAAAGCAATCACATTGTGACGCCCATCAAAATGGAGCGTCGTGATTCGAGCACATCCGAGTCCTCGTTGGAACACTTGGATCTAGGCCGCACTCCAAAGAAGCTCAACACACATTCCTCCGCCACATCAACGCCACACATTGGCAACAGTGGCAACAACAACACCAACAATGCTTTGGTTCTATCCGCTGCTGTTGTTGCCGCCACCGCCGCCAACATAGAGCACGCCACACAAAATGCCATCGAAACCAGCCTGAAACCGGCTCGCCATTCGCATTCGCAACATCACGACTCTGATGAGGCGAACGACTACGACGAAGATGATTCTGCTGACGAAAAACATAGCTCAACACGATCGCACCGCCACCATCATCACAAGCGACGCAGCAGCGGTCGCTTAGACAAACGCAGCGTTCAACTAGAGCTAAATGCAGAGAATCCAAATTCGCTGCGCAAAAAATTTCGTTTCAATCGCAGCGTTGTCGATATCAATTCAATGACCAACAACGAGTCAGGCTTCGTGGATGCCAGCACAAGCAGCAGTCAAGTGCTAAATGCCTCTGCCACTTCGGCGCAGCAAGCGCATCACTCACCTGAAACTTCGGCCACTGGCTCACAGAGCTCATCTTCGGCTTCATCATCGCCACATGGTGCGGGTGCGTCGGCATCTAGTCCGGAGTCAGGCATTGGTGATCGTGAAGACATGAAATTCGTGTGTCCCATATGCGAGGTGGTGTCAGCTACACCACATGAGTTCACCAATCACATCCGATGCCACAACTACTCATCTGGCGACACAGAGAATTTCACCTGCCGCATATGCTCAAAGGTTTTATCATCTGCCTCCTCACTCGATCGGCACGTACTGGTGCACACAGGCGAGCGGCCCTTCAACTGCAAATATTGTCATCTTACGTTCACCACCAACGGCAACATGCATCGACACATGCGCACCCACAAGCAGCATCAGCACAATCACCATCATCGCCGGAACTCAAATGGAACAGCAGCAAAGCAGCATTCCAACAACAACAACAACAATAACAGCATCATCATTAACACCTCCGTGGCTGGTACAATGCCAACAACAGTCGTCAACAGCACGCAATTAACGAATGGTAGTAATGGTGAAGGTGTCAAAATAGTAGTAGCAACAGCAGCAGCAGCAACGATTGCGCCCACGACAATCGCTTCAGCCAACGGCACAGGTGCTAATGGTAGACGCTTAAACGGCGCTGTAGAAAGTTACGACAGCGATGGCGGTTGCTCAACGGACTCATCAAGTGCCATCAGCCACAGCTCAAATAATCATAAAAATAACAATAACAACAACAATAACAACAACAATGTAAAAACTAGCAATTACAACAATAGTGTGAGCAACAATTGCAAGCGCAAAAACAGCGATAACTTAGACGCTGATATTACGCTTCTCAAGCGACGCGTGAAGACCTCAATTAACAACAACATCATCAACTCCGGCGATGAAAACCACATCGAATCAGCGTCTGGTACAGCAGAGGAACAGCATGATTTTGATGCTCATGCGCAACAGCATCTCTTTGCCTGTCCGGTCTGTAGCTCCAGCGATTTTGATTCCATGTTGGCACTCAGCGTCCACATGGACAGTCAACACTGCGATATACCTGCCAAGTGCCGACATTGCGATGTGGTCTTCCACACGCATCGTCAGCTAAATGTACATCCCTGCACTAGTCGATCACATAAGGGAACGCCAACTCTCAAGGATCTCACATTCATCGACTTTTCAAGCAAAAAGTTTCCACTTATCTCCAAGTCATTGAACGAACAATGTCCAAAATATGAGTGTCCTAAGTGCAGTCAAAACTTTTCTTGCTCAACCGCATTAGAAATGCACGTGCAAGAGTGTTGTAAGCCTTTCAACTACAGCGAACGCGAATACAAGATGCATCGACGCGACTCTAATCAACGAAGTTTTAGTGAAAGTTCCGCCGGTGCCGAAGATGTTGAGGCGGAGGTGGAGGTAGAAGAGGAAGAGCAACAACGACGTGAAGATTTCTTCAAACACATGTATCTCAAGAACAAAGCGATGGAACATCCACACAGCATGAACTCTTTGCTGTCGCCACATCACTCCATGGATGAGCACCTAGATGATATTAAGTTTGAGGCTGATTGCGAGAAAATGACACAACAGTCACACGACTCAAAGGATCTGGCCGATATTCAGTCAATTCTCAACATGACATCATCTTCATCTACTTCGAATTTCCTTAAAAACTTCGAACACTCAGTCAACACGCCATCTAGCAATTATGGTCTGGACAAGGATGAAGAGGAGGCTCAGGACGCATTTACTTCAGAGTTTCGCAAGATGAAGTTGCGTGGTGAGTTTCCATGCAAGTTGTGTACCGCAGTTTTTCCAAACTTACGCGCACTCAAAGGTCATAATCGCATTCATTTGAGCGCAGCTGGACCTGCAGGTCCATTCCGTTGCAACATGTGTCCCTACTCGATATGCGACAAGGCAGCACTAGTGCGTCATATGCGCACACACAACGGGGACCGACCCTATGAGTGTGCTGTCTGCAACTATGCCTTCACCACCAAAGCCAATTGTGAACGGCATCTGCGCAACCGTCATGCCAAAACCACTCGCGATGAAGTTAAGCGTGCCATTATCTACCATCCTTCGGAAGACTCTTCCTGTGATGATCCGTCTAAGAAGTTACATCTCTTCTCGTCACCTGAATTCGACGATGACGTTGAGTTGCAGTATCAGCACCATCAACCTAAAGATCGTTCAACACCTGTCTCACATCTCAAGGAAATGTTGACCTATGACGATGTTCGTTCTAACAAAGCTATAAAAATACAAGTCAAGAGCCTCGAGCAGTTGTTAGATAAATCAACTCCTTCAACCAGCTACAATGAGCTCTATGAGGAGCGCGAGCAGCCAAGCCAAGATGCACGACATCTGCAGGAAATTGCTCATTCGCCCATTGACTTAAGCATGGACGTCTTGGATTTGAGTAAGAAGCCTACCAAGCCTGCTGTAGTAGAGGAACGTACATTACCAATCACCGCAACTGATATGCCAGAGAAAAAGCTACCATCTGCGATCGCTGTCGAAGATCCTAAGTTTGACATCTCCATTTTGGAAAAAAACCAAGAGTATCTTCTGGCTCAGCAACAGCTCATCAACGAAGCTCTGCCCAAAATTGTTGATCCCGCACACTATTTCCAACAACTCTATCGAAATTTGGTGTTTCCACCAATGGGTCCGTTGAATCCATTTTTCCTACAGAATTCTTTTCTGCCCAATAACTTGGGTGATCTACAGAAGTACGCACCTTTAATGAGTCGCATGTTTGGCTCCACTCCAAGTGCTATGATGCCATCAGATGCCTCGAAACCCAGCCAGTCAAGCATAGCTCCAAATGTAGCATCAACCATTATGCCCCAAGTCAGCCCAATGATGTCGGACAAATCTAGTGTTTCTTCTATGAACTCATCCTCTCCGGTGATCGCTGGTAATCAGATGCTGCCTAAGTCGCTTGCATCACCTACACCGCCTCAAGCGCTCAATATTCCGCGTCACCCACACATGACCTCGACAACACTGGCAGGAGGACCTGTTAAGATGGTCATCAAGAACGGTGTGCTCATGCCGAAACAAAAACAGAGACGCTATCGCACCGAGCGCCCCTTTGCCTGTGAGCACTGCTCGGCACGTTTCACCTTACGTTCCAACATGGAACGCCATGTTAAACAGCAGCATCCACAATTCTACGCCCAACGACAACGTAGTGGACATCATATAATGCGGGGGCGTGGTGCTAGCAGTGCCGTGGCCATGAACAGCATAACGCACTTGCAGGCTGCTATTGCTGCTCACAATGGTGGTGGCGGTCATGTTGGCTCCACTGCTATCTCAGAACAAGTAAAATATGCCATTTTGGCCCAACAGTTAAAGGCACGCAAAGACACCGACCTGCTGCAGCAAGCCTTAGCACACGGTTCCACCAATGTGGCACCCAGCCACTTGGTCTTAGGATCCTCAGTTGGTATAGCTAAGGCACCACATGATCTTCATACCAACCATTTCAACAACTCCAGCGCTAACGGCTCTTTGGAGGAAGAAGATGATCCCAAACTAATCATAGACGAAGATGATGAATATGATGATATTGAGGAGATACCTGATGAGAATGATGATGATCAAGATCAAGACCAAGAACACGAACCTGAGGACGTCCTAAATGAAAGCATAAATGAAGAGGAACAACAGCGTACTGACCTCAATGCTGTGGTGGAAAAAACAGTAAGAGAAGCCGCAAATGAATCCGCCAAGAAGGTAGCCGAAACTATACTTGAGCAGGCAATTAAAGCAGGTGGAAGCACCATCCTCACTAGTAAAACCCCTAAAACTGATAACACTCTGCCACAGCCTGTGGCTCCGCAACCTGCAACCACCATGAAAACAATGATTGCTCAGGCCGAATCTGTCGGTAAATTTCTCAAGGAAGTAGCTAGTTCGCCATTTAAGGACGAATCCCAAGATCTGGTACCCGTTTCAAAACTAGTCGATAACGCTACCACAAACTCCATGTCCTTCAATAACTACTTCCGTCCCAGCGATGTTGTCAACCACATGGAGCAGAGTGACGAAGAAGGTCTGGTTGCCTCCGGAAGTGCATCAGAGAGTAATAATTCTGGCACCGAAGATATATCATCCTCTGCTGAACCCAAAAAGAAATCCGCTTATAGCTTAGCACCAAATCGGGTCTCCTGTCCCTATTGTCAACGCATGTTTCCTTGGTCAAGCTCACTGCGACGTCACATTCTTACACACACAGGTCAAAAGCCATTCAAATGCTCTCACTGCCCGCTGCTTTTTACCACCAAAAGCAATTGCGATCGTCATCTTCTGCGCAAACACGGCAATGTTGAGTCCGCCGTCTCCGTTTACGTGCCCACAGAAGACGTAAACGAGCCAATACCAGTTCCTAAATCCGTTGAAGAAATTGAACAACAGCAACGCAAGCGTGAGGAGGAGGAACGCAAACGTAAGCTCGAAGAAGCCGCAAATGCCGAAAAAGAACGCAAAGAAAAGGAGCAACGTGAGCAGTTGGAAAACGAACAACAACAAATGTTAAAACAACTAGCTGCCGCTCAATATAACCACGCCATTGTCCAAGCTCAAGCCACACCGATCAATAGCTCAAAAACGGAGATAAATACCGCTACCACCGCAGCAGCCTTTTCAGAGCTACCTTTCAAGTGTCACCTGTGCGATAGCTCCTTTGGCGAGCGATTCCAATGCCTAGATCACATTAAAGCCCAGCACGCCCAAGAGTTTTCACTGCTACTTTCCAAGGGAGCAATCGACACCGATCCAGAACACAACCAAGTCCACTCCACCGAGGACGAAGAGTGTCGGCGTCCCGGAGACGATAGCAACGGACGTAGTGGCAAGTATCCCGACTACAGTAACCGCAAAGTTATCTGCGCTTTCTGCGTACGGCGTTTCTGGTCCACCGAAGATCTACGTCGTCACATGCGGACTCATTCGGGTGAGCGGCCATTTCAATGCGACATCTGCTTCCGCAAGTTTACGCTCAAGCACAGCATGTTGCGCCACATGAAAAAACACAACGGACGCCATCATAGTGGCATCAGTTCCGGAGAACTCTCGAATGCTGCGAACAGTGGATCTGACTTGTCCGATGATGAACAGATACCAACAACTACGCCAACGAACGCCATGTTAATGGCTAGCACGTTGGCCATGCGTACGCACAAAATCCAGGAGTTGCTTAGCAAAGCGAATGAATGGCGCACGAATCGCATGTCGCTGGGAGAGCACAAAGAGAATATTGCCGAAGAGCACAACACACAGACGGATCTCATTGGCAATTTGCTGGGCATCAGTGATCAGGGAATTTTGAACAAACTTCTCTCGTCAGCAGATGAAGCAGCCAAGTTTTTAGGCGTTGAAAAATAG
Protein Sequence: MLKTATNNTTATTQLTTNTTANQTQQHTESNHIVTPIKMERRDSSTSESSLEHLDLGRTPKKLNTHSSATSTPHIGNSGNNNTNNALVLSAAVVAATAANIEHATQNAIETSLKPARHSHSQHHDSDEANDYDEDDSADEKHSSTRSHRHHHHKRRSSGRLDKRSVQLELNAENPNSLRKKFRFNRSVVDINSMTNNESGFVDASTSSSQVLNASATSAQQAHHSPETSATGSQSSSSASSSPHGAGASASSPESGIGDREDMKFVCPICEVVSATPHEFTNHIRCHNYSSGDTENFTCRICSKVLSSASSLDRHVLVHTGERPFNCKYCHLTFTTNGNMHRHMRTHKQHQHNHHHRRNSNGTAAKQHSNNNNNNNSIIINTSVAGTMPTTVVNSTQLTNGSNGEGVKIVVATAAAATIAPTTIASANGTGANGRRLNGAVESYDSDGGCSTDSSSAISHSSNNHKNNNNNNNNNNNVKTSNYNNSVSNNCKRKNSDNLDADITLLKRRVKTSINNNIINSGDENHIESASGTAEEQHDFDAHAQQHLFACPVCSSSDFDSMLALSVHMDSQHCDIPAKCRHCDVVFHTHRQLNVHPCTSRSHKGTPTLKDLTFIDFSSKKFPLISKSLNEQCPKYECPKCSQNFSCSTALEMHVQECCKPFNYSEREYKMHRRDSNQRSFSESSAGAEDVEAEVEVEEEEQQRREDFFKHMYLKNKAMEHPHSMNSLLSPHHSMDEHLDDIKFEADCEKMTQQSHDSKDLADIQSILNMTSSSSTSNFLKNFEHSVNTPSSNYGLDKDEEEAQDAFTSEFRKMKLRGEFPCKLCTAVFPNLRALKGHNRIHLSAAGPAGPFRCNMCPYSICDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKTTRDEVKRAIIYHPSEDSSCDDPSKKLHLFSSPEFDDDVELQYQHHQPKDRSTPVSHLKEMLTYDDVRSNKAIKIQVKSLEQLLDKSTPSTSYNELYEEREQPSQDARHLQEIAHSPIDLSMDVLDLSKKPTKPAVVEERTLPITATDMPEKKLPSAIAVEDPKFDISILEKNQEYLLAQQQLINEALPKIVDPAHYFQQLYRNLVFPPMGPLNPFFLQNSFLPNNLGDLQKYAPLMSRMFGSTPSAMMPSDASKPSQSSIAPNVASTIMPQVSPMMSDKSSVSSMNSSSPVIAGNQMLPKSLASPTPPQALNIPRHPHMTSTTLAGGPVKMVIKNGVLMPKQKQRRYRTERPFACEHCSARFTLRSNMERHVKQQHPQFYAQRQRSGHHIMRGRGASSAVAMNSITHLQAAIAAHNGGGGHVGSTAISEQVKYAILAQQLKARKDTDLLQQALAHGSTNVAPSHLVLGSSVGIAKAPHDLHTNHFNNSSANGSLEEEDDPKLIIDEDDEYDDIEEIPDENDDDQDQDQEHEPEDVLNESINEEEQQRTDLNAVVEKTVREAANESAKKVAETILEQAIKAGGSTILTSKTPKTDNTLPQPVAPQPATTMKTMIAQAESVGKFLKEVASSPFKDESQDLVPVSKLVDNATTNSMSFNNYFRPSDVVNHMEQSDEEGLVASGSASESNNSGTEDISSSAEPKKKSAYSLAPNRVSCPYCQRMFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNVESAVSVYVPTEDVNEPIPVPKSVEEIEQQQRKREEEERKRKLEEAANAEKERKEKEQREQLENEQQQMLKQLAAAQYNHAIVQAQATPINSSKTEINTATTAAAFSELPFKCHLCDSSFGERFQCLDHIKAQHAQEFSLLLSKGAIDTDPEHNQVHSTEDEECRRPGDDSNGRSGKYPDYSNRKVICAFCVRRFWSTEDLRRHMRTHSGERPFQCDICFRKFTLKHSMLRHMKKHNGRHHSGISSGELSNAANSGSDLSDDEQIPTTTPTNAMLMASTLAMRTHKIQELLSKANEWRTNRMSLGEHKENIAEEHNTQTDLIGNLLGISDQGILNKLLSSADEAAKFLGVEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01415288;
90% Identity: iTF_01415288;
80% Identity: -