Pcor026994.1
Basic Information
- Insect
- Pherbina coryleti
- Gene Symbol
- -
- Assembly
- GCA_943735905.1
- Location
- CALSEP010001108.1:832139-835746[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.011 1.7 10.4 0.4 2 23 204 226 203 226 0.94 2 18 0.11 17 7.3 2.0 2 19 269 286 269 288 0.94 3 18 0.18 29 6.6 1.0 2 23 330 352 329 352 0.91 4 18 0.45 73 5.3 4.0 2 23 359 380 358 380 0.96 5 18 2.1e-06 0.00034 22.1 1.7 1 23 387 409 387 409 0.99 6 18 0.00023 0.038 15.6 3.7 2 23 413 434 412 435 0.94 7 18 0.33 54 5.7 0.1 3 20 445 462 444 463 0.94 8 18 0.00065 0.11 14.3 0.3 1 23 483 507 483 507 0.90 9 18 0.22 36 6.3 1.5 1 23 512 534 512 534 0.97 10 18 0.9 1.5e+02 4.4 0.8 1 23 550 575 550 575 0.94 11 18 0.1 16 7.3 0.2 3 19 582 598 580 601 0.90 12 18 0.0067 1.1 11.1 0.8 1 23 608 631 608 631 0.96 13 18 0.0027 0.45 12.3 0.5 1 23 636 659 636 659 0.91 14 18 0.0048 0.78 11.5 0.8 2 23 663 685 662 685 0.96 15 18 0.00018 0.029 16.0 1.4 1 23 691 714 691 714 0.97 16 18 0.0026 0.43 12.3 0.4 1 23 719 741 719 741 0.98 17 18 0.00037 0.06 15.0 1.0 1 23 747 769 747 769 0.98 18 18 0.012 2 10.2 1.1 5 23 776 795 775 795 0.93
Sequence Information
- Coding Sequence
- ATGCCACGGAAATTAGAGCAAAAGAAATGCATTCAATGTAATCGGAGCGAAGACACAGAATTTCATGAAATCTTTGATGAAGTCGGTATCGAGTTGCAACTGGACGCATTGCTGGAACAGCACTTTCAGTTGAAGGTGACGTCTATTCAGGCCGAGCAGCCAGTATTGTGCGATGAATGCGTGAATCAGCTGATTGAACTATTCGATATAGCGGAAAAACAAAAGGAACAAGAAACTCTAATACCAGATGAAGAGGATGACAAATCAGAAGTATCATTGGAGAAGAAAGAGGATACAAATGTATCTTCTTCGGTGATTGAAACTGAGTCCGATGGAGACATAAATGATGCCGGTGGCTGTACAGAAGAAACTTTTGTTAATGCGTTTATTGAGGATGAGGATGAATTTTTCGAATGGAACGACGATGAAACAATTAACAACGATGAATGCATCGAGCTGAAAGAGGACACTGAAGAAAAGTTTACGGAAGACCAGGCGGACTGTGGCGAAAATAAACTTGATGAAGAATTCGACGACACTGCGCTGCAACTGTATGCGGATGCTACAATTAATAGCAACTTGGAAGATTTGCAGCTGGAACGCGAGAGTGTATGCAATATTTGTTCAGAAACATTGACGCAACATCAGGACTTATTGCTGCACATTCAAGAGTTGCATAACGATGAAAATGGATTCTCTCCTTGTGTCTTGGACAACTGCCAACAGTTATTTGAGAATAAACGGATCTTGGCTAGACATATTGTTCTGAAGCACTATGATCTGCGAGGGATTTCTATTTTTGGTTCTTGCTCCAATTGCGGCATGTCATATTCAAATTTTATAGATTTCAATAAGCACTCATGTTGCAGAACTTTGAAATATAAGGGAAGGAGTCCGAATTACTGCCGCGATTGCAAAACTGATTTTCCCACATTTAGAAGGTACCGTTTTCATATGCAATTTCATATGAAAAATCCACGGCCGAAAGTGTGTCTTCTATGTGATCGTTTCTTTAAGGACGGCGAAGAATTCTTTGAACATGTACACTACGATCATGAGCCACCAAATGAAATGATGTGCACAAAATGCGATCGAATGTACAAATGTAAAAAACTTTTTGACGCTCACATGACATCACACAATTCAACATTCAAAAGTTTCCAATGTACTTTATGCCCCAAAGCCTATTCCCATAATCAATGGCTTAAAATTCATATGCAAACGCATGAAGAGCTTAAGTGTGAGACCTGCAATAAGATCCTCTCAACCAAAGACTACTTTCGGAATCACATGAAATTGCATCACCCAGACACTGAAGTACATATCAGTTTCTGCAAGGTATGTGGACAAATTGGTCGTGAAAAAGAAGATTTGCAGGAACACACAGAAGATGAGAATTCAACTTGTTATAAAGCTGAGATTGAAGAAGGCTTTGTGGATGTGGTCTATTTCTGTGAATATTGCGAAGCTGTTTTCAAAGGCAAAACAGAGTTGAAGCAACATCGTGCCACTGGAGTACACGACGATAAGGTTTTTCGTTGTCATGCTTGTCCAGCAACGTTCGATGAGCTTCGTAAGGTGCGAGCACATTTCAAATCTCATAAAAACTACGTTGACTGGCGGAAATCATTGCCATTGTATAGAATGTACATGTGTGATGTTGGTGACTGTGAACAATCATATGCCGTGTTTATGTCGCTGCATAGTCATAAAACTATGAAGCATAAAGAATTAAGACTAATCTGTGCTAGTTGCAATACAAAGTTTACCAACAAAGATGAGTTTGATGCTCACTCAGAAAAATGTCAAAAAGATGGAATGTATACTTGTCAGTTTTGCGGTAAGCAGTATCCATCGAAGATGTCCCGTTCGGTGCATATAGCAAGAAGTCATAATAATAAAAATTTTAGCTGTTCATCATGCAAAGCATCCTTTAAAGACGAAGAAAGTCTAGCGAAACACGTTGAGTTCATGCACGTTGCTATGGAGTGCGCAATATGTCGAAAAAAAATCAAGAACAAGAAAAATCTTTTGCTGCACGAACGCGTTAAGCATGGAAATGAAAAACGTTATTTTTGTGAAACCTGCCAAAAAGGTTTTTACAACAAAGGTGATATGGAGGTGCACAAAAGAACGACGCATTCCGCCATCAGCTATGTCTGCGAACAATGTCCGTTTACCACCAACTACAAAAACTCGCTGGATATTCACATGGCAAGGCATAATAACGATCTTCAGTTTGAATGCTCTATTTGTAATAGAAGATTTGCACGCAAAAGAGTTATGGAACTGCATGTTAAACGCCATCAGGATTATAGTGATTATAATTGTACGGCTTCTTTTATAACAAAGCATCTGCTGAACCGACATATTAAAGAGAAACATTTACGTGACCCTGCGCATGCTAAAGGTCCTGCGAAAAAACGCAGTCGCAAACAGAAACTAACCAATTTTGTGCCTATTGAAAATTCTTGCGATCAAGATGATCCTGCCTATAAACCAACAACTGAGGAAAGTGATGAATATCTTACATATATTTGCTATGAAAATGATAGTGAAGAACCGATAGATTTTGTTATTGAAGAAAGTGTCAGCCAAGAGTTGGAAATAGCACAGGAATTAGTAACGGAGTATCCAGAAGATGTTGAAGGGATAATACTAGAAGATAACCTTGTTTAA
- Protein Sequence
- MPRKLEQKKCIQCNRSEDTEFHEIFDEVGIELQLDALLEQHFQLKVTSIQAEQPVLCDECVNQLIELFDIAEKQKEQETLIPDEEDDKSEVSLEKKEDTNVSSSVIETESDGDINDAGGCTEETFVNAFIEDEDEFFEWNDDETINNDECIELKEDTEEKFTEDQADCGENKLDEEFDDTALQLYADATINSNLEDLQLERESVCNICSETLTQHQDLLLHIQELHNDENGFSPCVLDNCQQLFENKRILARHIVLKHYDLRGISIFGSCSNCGMSYSNFIDFNKHSCCRTLKYKGRSPNYCRDCKTDFPTFRRYRFHMQFHMKNPRPKVCLLCDRFFKDGEEFFEHVHYDHEPPNEMMCTKCDRMYKCKKLFDAHMTSHNSTFKSFQCTLCPKAYSHNQWLKIHMQTHEELKCETCNKILSTKDYFRNHMKLHHPDTEVHISFCKVCGQIGREKEDLQEHTEDENSTCYKAEIEEGFVDVVYFCEYCEAVFKGKTELKQHRATGVHDDKVFRCHACPATFDELRKVRAHFKSHKNYVDWRKSLPLYRMYMCDVGDCEQSYAVFMSLHSHKTMKHKELRLICASCNTKFTNKDEFDAHSEKCQKDGMYTCQFCGKQYPSKMSRSVHIARSHNNKNFSCSSCKASFKDEESLAKHVEFMHVAMECAICRKKIKNKKNLLLHERVKHGNEKRYFCETCQKGFYNKGDMEVHKRTTHSAISYVCEQCPFTTNYKNSLDIHMARHNNDLQFECSICNRRFARKRVMELHVKRHQDYSDYNCTASFITKHLLNRHIKEKHLRDPAHAKGPAKKRSRKQKLTNFVPIENSCDQDDPAYKPTTEESDEYLTYICYENDSEEPIDFVIEESVSQELEIAQELVTEYPEDVEGIILEDNLV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -