Pcor022770.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pherbina coryleti
Gene Symbol
-
Assembly
GCA_943735905.1
Location
CALSEP010000847.1:267423-269472[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.034 5.6 8.8 0.4 2 23 107 128 106 128 0.96
2 10 0.25 41 6.1 1.5 1 23 215 238 215 238 0.91
3 10 0.081 13 7.6 0.3 2 22 246 266 245 266 0.94
4 10 1.5e-06 0.00025 22.5 3.1 1 23 315 337 315 337 0.97
5 10 8.3e-07 0.00013 23.4 1.8 1 23 344 366 344 366 0.98
6 10 5.9e-06 0.00096 20.7 5.2 3 23 383 403 382 403 0.99
7 10 2.1e-06 0.00034 22.1 0.4 1 23 409 431 409 431 0.99
8 10 6.3e-07 0.0001 23.7 0.2 1 23 437 459 437 459 0.98
9 10 0.002 0.33 12.7 1.2 1 23 463 485 463 485 0.98
10 10 2.3 3.7e+02 3.1 1.7 3 19 492 510 491 513 0.88

Sequence Information

Coding Sequence
ATGAGCGATGATGTTATAACTCAAAAAGACCATAATTCGAATGGTGAGGAACAAATTGCCGACGACAGTAACACTGTTGCAGAACTACTACAAAGCAGTAAGAGCTGCAGAGATATTCGGGGAAAAAACCAGAAGCCACGTATAAATCAAGTTACCGACGTCAAACGGCGTTCCAAGCGCCATCACGAAAAGGACCAACAACATGATGAAGATCATCGAGCAAGTTTTAAGTTTACTGATGAACAGCTGAAGCAACTTTGCTGTGATATAAGCGACAACGAAGAGGCCCAATGTGTGCCGAATGGTCTCAAAACAATTGAATGCTTTATTTGTGGCCTACAATTTCTTAAAATTTATAAGCTCAGGCAACATATGCAGCTGCATGCGCGTAACGAGCTCTTTGATGACACCACATTGGAACGGTCAAGCATTTACAGCGTCCTCAATCCCCATCAGCGTAATATCGAAGCGAGTGTTGTACGCGACTTCTTGGTAAATGAGATCAAAGCAAAACGATATTCCCAGTTCTATGGAATACTAAGTGAGGCTGGCATCGAGTTGCATATAAGTGATTCGGAAACGGAAACAGACAGCGACATAGAAAACTGTGCCTTTGAAAAAAAATTAATTCCTAGAAAAAGTTACAAATGTGATTTATGTAAAATTGACTTCGATCGTCGTTATAAAGCGCTCTTCCACCAAAAAACCATTCATTCCAACTGCGATCTATATATAGAATGCAATTTTTGTGGTTGCCAGTTTATTGGCACCGAATTGCTCATATATCATCTAAAAACTCAATGCGAAAACGATGAAAAGCCGATATCGTGTATTGAACGCTTTAAGCAATACTTGGTGCGCATCAACATCGAACAATTCGAAAGTTTAGCGCAGGCACGTAAGGAACTGAAGATTCAGCGTCTAACAACAGCGCAGAAAGTTTATAATTGTAACGTGTGCTCGAAAACTTTTACACGTTCGGAGCATTTGACGCGGCATAAGGCTGTGCATCTGCCGGAAGATTTAAAGTTTGAGTGTCCTGTTTGTTTTCGGCGCTTCAATCGAAAGGATAACATGCGCACGCATATGAAGGTCCACATGGACGAAGCCGAGCGAGACATAAGCTCAAACAACCAGCCAATACTCTGTCAATATTGCGGTCATTGCTTTACCAGCAAATCCAATTACGTTGTCCACATGCGACGCCATACTGGAGAAAAACCCTACAAGTGCGATGTATGCGGCAAAGGTTTTCCCAAGTCGACCGATTTAAATTCGCACAAAATAACACATTCCGGTGAAAAGAATTTTATTTGCAATATTTGCAATAAAGCATTTGCACGCAATGCTGTACTCTCGAAACACATGCGCATACATGCCGGTCCATTTCATTGTAATTTGTGCGCTCAATCATTTTTGCGTCCTAATGAGTTGGCAACGCATTTGCGCACGCACATTAACGGAGGACGGGCTTGCACTTGTATTGTATGCAACTGTAATTTCCAAACTCAAAAAGAATTGAGCGATCATTTCGTTGCTAGTGGACATGATAATGTACGTGCCGACTCGGAACAAAGTAAGCCATTGCGCTTGTCAACTGCATCTTCGGTTGCCATAACCACTGATGCCAACAATAGTATATTAAGTACTGGGACGCAACCCGCTGCAGCTCCAACGCCACCACAAGCAAACATTACTGTCGATGTGTTAAATGAAGACATTAAAGCTGAAATTATTCCACTAATACAAGATTCGGCTGGAGTATTACAATCTATTTGTACCTTACATCCAGATGCGGTTGTGGTTGTACCAAACGGAGTTCTTAATGAAAAAGACAAATTGTACGGAAGATGGCAGCAATAA
Protein Sequence
MSDDVITQKDHNSNGEEQIADDSNTVAELLQSSKSCRDIRGKNQKPRINQVTDVKRRSKRHHEKDQQHDEDHRASFKFTDEQLKQLCCDISDNEEAQCVPNGLKTIECFICGLQFLKIYKLRQHMQLHARNELFDDTTLERSSIYSVLNPHQRNIEASVVRDFLVNEIKAKRYSQFYGILSEAGIELHISDSETETDSDIENCAFEKKLIPRKSYKCDLCKIDFDRRYKALFHQKTIHSNCDLYIECNFCGCQFIGTELLIYHLKTQCENDEKPISCIERFKQYLVRINIEQFESLAQARKELKIQRLTTAQKVYNCNVCSKTFTRSEHLTRHKAVHLPEDLKFECPVCFRRFNRKDNMRTHMKVHMDEAERDISSNNQPILCQYCGHCFTSKSNYVVHMRRHTGEKPYKCDVCGKGFPKSTDLNSHKITHSGEKNFICNICNKAFARNAVLSKHMRIHAGPFHCNLCAQSFLRPNELATHLRTHINGGRACTCIVCNCNFQTQKELSDHFVASGHDNVRADSEQSKPLRLSTASSVAITTDANNSILSTGTQPAAAPTPPQANITVDVLNEDIKAEIIPLIQDSAGVLQSICTLHPDAVVVVPNGVLNEKDKLYGRWQQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-