Pcor001994.1
Basic Information
- Insect
- Pherbina coryleti
- Gene Symbol
- zfy1
- Assembly
- GCA_943735905.1
- Location
- CALSEP010000048.1:578325-584049[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 7 1.1e+03 1.6 1.4 3 17 58 72 57 73 0.82 2 13 0.001 0.16 13.6 0.2 1 23 291 314 291 314 0.94 3 13 3.3e-06 0.00054 21.5 1.4 1 23 319 342 319 342 0.96 4 13 8.9e-06 0.0014 20.1 5.1 1 23 347 369 347 369 0.98 5 13 0.0024 0.39 12.4 0.4 2 23 376 397 375 397 0.95 6 13 0.0011 0.17 13.6 3.2 2 23 405 427 405 427 0.95 7 13 0.019 3.1 9.6 1.7 1 23 433 456 433 456 0.95 8 13 4.4e-06 0.00071 21.1 0.9 2 23 467 489 466 489 0.95 9 13 0.0001 0.016 16.8 0.2 1 23 515 537 515 537 0.96 10 13 5.6e-06 0.00091 20.7 3.5 1 23 544 566 544 566 0.96 11 13 0.00025 0.04 15.6 0.2 2 23 573 594 573 594 0.97 12 13 0.012 1.9 10.3 0.8 1 23 601 623 601 623 0.98 13 13 0.1 17 7.3 5.0 1 23 629 652 629 652 0.97
Sequence Information
- Coding Sequence
- ATGGAGACGTGTAGAACTTGTGCTAAATGTGATTTTGGTGGTGATGATGATGCCAAGTGGTTGGACTTGTTTCATCCAGTTAGTTGCCAGAATGAGATGCAGAGCATACGAATGGAACTTGACATTTGGAAATTACAGATAACGCCGAATGATGGTCTTCCACAGAAAATATGCACGGATTGTTTTACGAAATTCTGTTCTGTTCATGCAATGCGACGAGAATGTCTGGAAGCACAATTATTGTTAAAAAATCTTTTTGAGAACATAGAGTCTCAAAGTGAGTTGGATAGTAGCAACAATAGTAACGATTTCAGTATGAATATATGTCCACAGACTACAGCTAGTCAAAATCTTAATGATACAGTTGATAAAAATTTAAGCAAAAGTACGGAAAGTGCAATTGGTAAAGGGCTTGATTATTGTATCAGCACGGATACAGACGAAGCTGATAAGTTTACCATAGAGGTAGGAAAAGACACCGAATACACAGAACTAAATACATTGCCAACCGAAAATGATTCCAAAGAAACTTCCGAAGAAAATGATCAATGTGATCAAAACGACTTAGTAACTATAGAAACTGCCGATATTATTAGTACTACTATTGAAGAGCAACCACCTCCTGAAGATTATATATATATCACAATCAACAACGACACCGACAAAAAAACGGAGAAAATAACAATCCATAAACTATCGCCTATCAAAAACAATTCCATAGATCAACAACCCATAGAATGTTCGAACGAGATATCGTTCACATTTGAATGTAAATATTGCTACAAAATAAAGGACACCCCCGCTAAGCAATTCTTATCCCAAGGAGAACTTCTTGATCACATATCACAATCGCATGATTCGGTAAATCCATACGATTGTCCTTATTGTGATAAAAAGTATCCGGATGCACCATCAAGAACGATGCACATAAAGGATCAGCATGTTGAGAAACAATATGCATGCGATATTTGTGGCAAGAAGTATGCAGATCGTTTTAATTTGCGACATCACATTGAGAAGTATCACAGCAAAGCCAATTTTAAGTGCGATTCCTGTGACAAAAGCTTCACAACACAAAAGAGTTTAAAACATCACTCTCGATGGCATATACCCGAAAGACAACTTAAGTGTGCCTATTGTGACAGGCTATTCATAAGTGAGCGACAATTGAAGATGCATGAGGTAACACATACGGGGATAAGGAACTCTGAATACTGCACATTCTGTGGTAAATCGTTCTTTCATATTAAAACTCTACGATGGCATATTTATAAAAACCATGGAGGACAAAAACCATTTAAATGCACTCTTTGTACGGAGGTTTTTGACTCATATAAAAAGAAACGCCTGCATATGCTAGAAAGTCATGCGAAACATTTAACATCCGTAGAAAAGTCACAGTGTATGATATGCAATAAGAAATTTCCAAACGAGTCTGATTTGCAGAAACACATGAGCAATAACCATGACGATAGTGCTATTGCAATTGTCAATGATAAACGTGTGCTTCAAACAAAAAAGCAAAAAAAATTTAGTGGAGTCTTTCAGTGCGAAGAATGCCCGCAAAGATTTAATTTAAAATCTGCTTTAGTTCGACACTCGGCGGTACACAACATCGAAGGTAGACCACATGCCTGTACCGAGTGCAAAAAGAGATTTAAACGCATACAAGACCTGAGGTGGCACATGAAGACACACTCGAATGAGAAACCCAATGTATGTGATGTTTGTGGCAAAGGCTTTGCCTTGAAATACGTACTGACCCAGCATAGGAAAAGTCACGAAGCTCTGGAAAAATGTTTTCAATGCGCAACTTGTGGGCGCACTTACTTATTTGAGAAATCATTGCGTCTCCATGAACGAATTCACACTGGGAAAACCTATTACAACTGCGACCTGTGTGGCGAAAAATTTGTTACCCATATCAAATTTTTATGTCATATGCGTAAAACTCATGCAACTAACAATAACAAAGATCAGGAGTATTTAGATGAGTTTGTTGATGATGTGATCAGCGAATAA
- Protein Sequence
- METCRTCAKCDFGGDDDAKWLDLFHPVSCQNEMQSIRMELDIWKLQITPNDGLPQKICTDCFTKFCSVHAMRRECLEAQLLLKNLFENIESQSELDSSNNSNDFSMNICPQTTASQNLNDTVDKNLSKSTESAIGKGLDYCISTDTDEADKFTIEVGKDTEYTELNTLPTENDSKETSEENDQCDQNDLVTIETADIISTTIEEQPPPEDYIYITINNDTDKKTEKITIHKLSPIKNNSIDQQPIECSNEISFTFECKYCYKIKDTPAKQFLSQGELLDHISQSHDSVNPYDCPYCDKKYPDAPSRTMHIKDQHVEKQYACDICGKKYADRFNLRHHIEKYHSKANFKCDSCDKSFTTQKSLKHHSRWHIPERQLKCAYCDRLFISERQLKMHEVTHTGIRNSEYCTFCGKSFFHIKTLRWHIYKNHGGQKPFKCTLCTEVFDSYKKKRLHMLESHAKHLTSVEKSQCMICNKKFPNESDLQKHMSNNHDDSAIAIVNDKRVLQTKKQKKFSGVFQCEECPQRFNLKSALVRHSAVHNIEGRPHACTECKKRFKRIQDLRWHMKTHSNEKPNVCDVCGKGFALKYVLTQHRKSHEALEKCFQCATCGRTYLFEKSLRLHERIHTGKTYYNCDLCGEKFVTHIKFLCHMRKTHATNNNKDQEYLDEFVDDVISE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01415249;
- 90% Identity
- -
- 80% Identity
- -