Pcor031141.1
Basic Information
- Insect
- Pherbina coryleti
- Gene Symbol
- Zfy2_1
- Assembly
- GCA_943735905.1
- Location
- CALSEP010001550.1:29104-33944[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.2e-05 0.0019 19.7 0.6 1 23 124 146 124 146 0.98 2 11 2.4e-06 0.0004 21.9 2.0 1 23 152 175 152 175 0.97 3 11 1.8e-05 0.0029 19.1 1.3 1 23 181 203 181 203 0.99 4 11 8.7e-06 0.0014 20.1 0.6 1 23 209 231 209 231 0.98 5 11 1.4e-05 0.0023 19.5 0.3 2 23 240 261 239 261 0.96 6 11 0.0024 0.39 12.4 1.1 3 23 269 290 267 290 0.95 7 11 0.36 59 5.6 0.2 1 23 296 317 296 317 0.90 8 11 4.2e-05 0.0069 18.0 2.1 1 23 323 345 323 345 0.98 9 11 8.6e-06 0.0014 20.2 1.8 1 23 351 373 351 373 0.99 10 11 0.0056 0.91 11.3 1.7 1 23 379 404 379 404 0.94 11 11 0.0011 0.17 13.6 0.1 1 21 410 430 410 431 0.95
Sequence Information
- Coding Sequence
- ATGGTGCGCAGTCGTCGTTCTATTTCCAAGGAATATGCCAGCTCCGTCTTGGCCGATAGCGGCATTTCGCTCTCCTCACCACCCGCCGCTACAGCACTGCTGCCCGAGGAGGAGGAAGAATTAATTGAAAAACTCTGCGTTACAGATGATGAGGATGAGGACGAGGATGAAGTCAAAAGTGCGCAAACTAATGATGATCATAAAGCAGCGGATGATGATAAAGTTGCCGCACTCTCCACTAGTTATGATGCGCCCAGCAAGCAAAGCACACCGCCATCATCACCTTTGCCAACGCGAATAAAGCGTCAGCGTCTAACATCAGCCTCTACCGCTGCCTCGGCAACAACGACAACAAAATCGCGCAAGTCCTACAAATGCAACGTGTGCCAAAAGCAATTTGGAGGCAATACCGATTTGCGACGGCATCTACTGATACATACCAATGAGCGTCCCTTCCAGTGCAGCAAGTGCACTAAAAGCTATCGCCAGCTGGTGAACCTTAAGAATCACATGACCAGCGTTCATGACACGCAACGACAATTTCGTTGCTCACTCTGTTCCAAATCCTTTGCCCTCAAGGAGCGTCTGCGGCTACACATGCGCATTCATTCGGGCGAGAAGCCCTATTCGTGCACGCAGTGCGACAAGAAGTTTGCGCGTGGCGGTCAGTTGCAACAACACTTGGTCACACACGACAGCGCCGCTGTCAAGAGCATTAGTTGTAATAAATGCTCGGCTGCTTTTTCAAGCGCCGCCAATCTGCGCCTTCACATGAAAAATCACGAAGAAGGCCCCAATCATCTGTGTCACATTTGCAATGAAATGTTTTTGAACGCAGTTGAGCTGCGCGCACACGTCAACACGCAACACTTTAAACTGAAACAGTTCGACTGCGATGTCTGTAAGCAGAAAATCGAAGATGATGACCTCGTCACGCATATGAAGACACATAGTAATGTGAAGACACACGTGTGTGAGGTGTGTAACTCGCTGTTTACCCAGAAGTCGCAATATAACGTTCACATGCGCATGCATACCGGCGAGCGACCATATCAGTGCAGGATTTGCTGGCAATCCTTTGCGCACTCGAGTGTCCTAAAGCTACACATCCGCAAGCATACCGGTGAAAAACCCTTCAAATGTTTGCTGTGCAAAAACGACGTTGCCTTCTCGCAGTTGGCACATCTTAAGACGCACATGAAAAAGATACACAAGCAAGAAAATTCATACATGTGCGAAGGCTGTCAGGAGTTCTTCAAAATCAAGATCGATCTGCAGGCACACATGGAGCAGTGCTCGCGCTGTGACCCAACCTCCAGTGAACGCTTGCAGAGTGACTCCTCCGACATGGCGCAGCTATCGCATCTACGATTTCTTATCGCAGTGCTGTTAAAGAAGATCTCATCAGAGCAAAGACTACTTCAACTGGGCTATGAGAAGCGTTTAATTGATAACGTAGTGATTGCTTCGCTAAAACTAGCAAATCGCAAGTCTTACGATGATAGCAAAATGAGTGAAATCGACCGCATGCGTTTGAATGTACAAGAATTTCTTGACTGGATTGTGCCGGCGGAGGTGATGGAGGCGTTCAAGCAAGAGCAGCTATCGGTCGAAAAGATATTGGATAAAATCGTTACCCTTTACATGAAACAGAAATGA
- Protein Sequence
- MVRSRRSISKEYASSVLADSGISLSSPPAATALLPEEEEELIEKLCVTDDEDEDEDEVKSAQTNDDHKAADDDKVAALSTSYDAPSKQSTPPSSPLPTRIKRQRLTSASTAASATTTTKSRKSYKCNVCQKQFGGNTDLRRHLLIHTNERPFQCSKCTKSYRQLVNLKNHMTSVHDTQRQFRCSLCSKSFALKERLRLHMRIHSGEKPYSCTQCDKKFARGGQLQQHLVTHDSAAVKSISCNKCSAAFSSAANLRLHMKNHEEGPNHLCHICNEMFLNAVELRAHVNTQHFKLKQFDCDVCKQKIEDDDLVTHMKTHSNVKTHVCEVCNSLFTQKSQYNVHMRMHTGERPYQCRICWQSFAHSSVLKLHIRKHTGEKPFKCLLCKNDVAFSQLAHLKTHMKKIHKQENSYMCEGCQEFFKIKIDLQAHMEQCSRCDPTSSERLQSDSSDMAQLSHLRFLIAVLLKKISSEQRLLQLGYEKRLIDNVVIASLKLANRKSYDDSKMSEIDRMRLNVQEFLDWIVPAEVMEAFKQEQLSVEKILDKIVTLYMKQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00351999;
- 90% Identity
- iTF_01415235;
- 80% Identity
- -