Basic Information

Insect: Pherbina coryleti
Gene Symbol: -
Assembly: GCA_943735905.1
Location: CALSEP010000012.1:880029-885091[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 9.5e-05 0.015 16.9 0.1 1 23 298 321 298 321 0.96

2 18 0.00058 0.095 14.4 0.5 2 23 326 348 325 348 0.93

3 18 0.0059 0.96 11.2 0.9 2 23 403 424 402 424 0.97

4 18 3.4e-06 0.00055 21.4 3.1 1 23 430 453 430 453 0.97

5 18 0.0041 0.66 11.7 1.3 2 23 470 490 469 490 0.97

6 18 0.0039 0.64 11.8 4.9 1 23 507 529 507 529 0.95

7 18 0.00018 0.03 16.0 3.0 1 23 538 561 538 561 0.96

8 18 0.0023 0.37 12.5 0.2 2 23 567 588 567 588 0.96

9 18 1.4e-06 0.00022 22.7 0.3 3 23 595 615 593 615 0.97

10 18 0.0083 1.4 10.8 2.3 1 23 621 643 621 643 0.97

11 18 0.025 4.1 9.2 5.2 1 19 648 666 648 670 0.90

12 18 0.03 5 9.0 1.1 1 23 675 699 675 699 0.97

13 18 0.037 6 8.7 4.0 1 23 780 803 780 803 0.97

14 18 1.5e-05 0.0024 19.4 0.4 1 23 810 832 810 832 0.97

15 18 4.5e-06 0.00073 21.0 0.9 2 23 838 859 837 859 0.97

16 18 0.0083 1.4 10.8 2.3 1 23 865 887 865 887 0.97

17 18 0.00099 0.16 13.7 1.8 1 23 892 914 892 914 0.97

18 18 0.49 80 5.2 0.5 1 23 919 943 919 943 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	9.5e-05	0.015	16.9	0.1	1	23	298	321	298	321	0.96
2	18	0.00058	0.095	14.4	0.5	2	23	326	348	325	348	0.93
3	18	0.0059	0.96	11.2	0.9	2	23	403	424	402	424	0.97
4	18	3.4e-06	0.00055	21.4	3.1	1	23	430	453	430	453	0.97
5	18	0.0041	0.66	11.7	1.3	2	23	470	490	469	490	0.97
6	18	0.0039	0.64	11.8	4.9	1	23	507	529	507	529	0.95
7	18	0.00018	0.03	16.0	3.0	1	23	538	561	538	561	0.96
8	18	0.0023	0.37	12.5	0.2	2	23	567	588	567	588	0.96
9	18	1.4e-06	0.00022	22.7	0.3	3	23	595	615	593	615	0.97
10	18	0.0083	1.4	10.8	2.3	1	23	621	643	621	643	0.97
11	18	0.025	4.1	9.2	5.2	1	19	648	666	648	670	0.90
12	18	0.03	5	9.0	1.1	1	23	675	699	675	699	0.97
13	18	0.037	6	8.7	4.0	1	23	780	803	780	803	0.97
14	18	1.5e-05	0.0024	19.4	0.4	1	23	810	832	810	832	0.97
15	18	4.5e-06	0.00073	21.0	0.9	2	23	838	859	837	859	0.97
16	18	0.0083	1.4	10.8	2.3	1	23	865	887	865	887	0.97
17	18	0.00099	0.16	13.7	1.8	1	23	892	914	892	914	0.97
18	18	0.49	80	5.2	0.5	1	23	919	943	919	943	0.93

Sequence Information

Coding Sequence: ATGGAAGAATTTGATGTGGCGGTGCAGTGCCGTGCATGTCTCAGCACCAATTCTTCGGAGTACATAGACATGGAATCTTCCATGGCTGGCGAATATAGCTACCTAGAATGTTTCAATATCTGCACTAATTTGAAAGCAAGCTCTGTAGATCAGCTGCCGGTTATTATCTGTACCGTCTGCTCACACGATCTACAGATTGCTTTTGATTTCGTGCAAGTGGCACGACAAGCGGACGCAGTGCTGCGCCAGAAACAGACAGTCAAATTCAAAGTGGAACATTATGAAGAGGAAGAAATGGAACGATTAGAATATATTGAAGGTGGAGACGAAGAAATAGAAGTAGCAAATACAGTTGAAGCGGAGGACCATATGCTTGAGTTGGAAATGGAAGAAGACGATGAGATTGAAGAAATGGAGTTAATTGGCGAAGACGACATGGAGGAGCAATATAGAGAACAACTAGAAACTATTGAGGAACAAGGAGGAGATGGTGTTGTAATAGAACAGGAGTATATCGAGGAAAAGCCACATGTGGAGCAGTTTATCGTGGAACTACAACAGAATGAAACTACCAATGAGTGCAGTGACAAGTTAAGAAGTTTGAAAGAAGAACAACAAGAGACCCAAGAATCGTATCCGGAGGATGAAATAGATGACGAGTACTTGCTGGAACACAATGCAATGGCGGAAGATGAATCACCACAAGGTTGGAAATGCTTTGAGTGCAAGCGCATGCTACACGCCGATGTATCCTATGAAGGTCACTTGAATATGCACAAAAATATAAAGCCCTACAAGTGCACGCACTGTCGCAGTACCTTCCGCTGTAGAAACTCCTTGGAGCATCATGCCAGCAAGCGTCATGAACAAGGTAAAACAGCACAGAAGTGCTTTACCTGCGATATTTGCGATAAACCATTCCGTCTTGCAACCCTTCTGCTCGAACATCGTCGTGCCGAACATAAGACATTATTGAATTGCAGCAAATGTACCAAGTCCTTTAAATCTGAGGAATTGCTGGATGAACATATGACACTCATACACCCACCAACGAATACGACACCTATACAATGTCCTTTTTGTGCCCAACCACCTCTGACAAAAGCACGCTTAGTAGAACATCTGCGCCAACAACATCCCACTGAGCATCGCAAGCATTTGCACACCGTTGGTCGTCCCTGTGATGAAAATAAAGTCACACCCTGGCAGTGCGAAGAATGTTTTCGATACTATCGCACCGAAACTTTGCTCAGAGATCATAGCAATACTCACACCAACGAACGGCCACATTCATGCAGCGTATGCGATAAACGCTTTTTTACTGCAAACAATCTCCGCAGCCACATGCGTTCGATGCATCAAGCCGAGTATGAGAAACGCATGGCCGAGAGTCTGGATAGTGTAGTCAAATGCGAAGTTTGTAAAAAGAAGTTGTTGCAGAAGAATTTGGAAAAGCACATGCTAACGCATGAACGCAAGGAAAAACAGACTGAAGGTGGTGGCGGCTCAACAGCAAAATATCTTTGCGCATATTGTCCTCGTGAATGTAGAAGCCAGAAAACACTAAATCATCATCAGAAACTGCACCAAAGCCAAGAATCTGGAATTATTTACGAATGCACTGAGTGCGAGCGTCAATATGCTACGCAGCATCATTTGGAGCAGCATCGCAAACTGGCGCACAAGGAGCGTGATAATGTTTGTGTCATTTGTGGCAATGCATTTAAATTAAAAAATCAACTGGTTAATCATTTGAAGCTACATTTAGAAAAGAACATCGCCTGCCCGAAATGTGATAAAAAATATGCGCGTCAATTTGATCTAAATGTACACTTGCGCACCCATACTGGTGAACTGCCATTCGCTTGTCATCTTTGCGAAAAGCGCTTTGCCATAAAGGTGCGCCTTACCTATCATCTGCAAAAACATCTAGGCGTCAAACATCGCTGCAAGGAATGTGGAGCCGAGTTTAATTCCAAACAGAAACTGAGGGCTCACTGCTATAAGCACACAGGCATGCCATATCGCTGCGAAATATGCGACAATCATGGTTTCGCAAATCGTGATGTCTTCAAGCGTCATCTGTTACGCGTACATAATTCTACCATGTCAGATGAGGATTTAGTGGAAATGTTTCAGCGCAATACTGGAAAAAGTACTCGCATTCGGCGAATTGAAGATATGCATTTAGTTAAAAAACCTTCCCAAACCGAAGATCTCAACTTGAAGCATGAAGATGAATCTTTTCTATATAACACTGAAATAAGCATGTCATTCATTAATCAAGCCAAACTCGGCAAGCATGAAGAAGTACACAATCCAGAGCGCACACGAAATTATCCCTGCGATTATTGCAAATCAAAATTTTACACAAACTATGACAAGAGTCATCATGTGCGAAGAGTGCATCAGGGAACCGAAAGAGCTTTTGTGTGTTCTGTCTGTGGTAATGCTTTTAAGGAAAAATCACAGTTGCAAAATCATGTCAAACTACATACGCAGAAGAATATACAGTGTCAACTTTGCGATAAAAAATATGCAAGGCAAACGGACTTCCAGGTGCACATGCGTAGTCATACTGGCGAGCTACCATTTGCTTGTCATCTCTGTGAAAAACGCTTCGCCATTAAGGTGCGTCTTACCTATCATTTGCAGAAACATCTTGGCATCAAACACGAATGCAACATCTGTGGCTCCATTTATAACAGTCGCGGAAAACTGCGCATGCATATGTTTAAGCATAACGGTATGCCTTACCGATGTGATGAGTGCCCAACAGCTGAGTTCTCTAAACGTGAACGCTTTCGTCTGCATATAACGCGCGTTCACAGTCGAACCCCTAGCGAGGAAGAGTTAACAGCGAATTTTGAGCGTAATACCGGCAAAGCAATACACATTAAAGAGGTGCAGGAGTTGAAGTTATAA
Protein Sequence: MEEFDVAVQCRACLSTNSSEYIDMESSMAGEYSYLECFNICTNLKASSVDQLPVIICTVCSHDLQIAFDFVQVARQADAVLRQKQTVKFKVEHYEEEEMERLEYIEGGDEEIEVANTVEAEDHMLELEMEEDDEIEEMELIGEDDMEEQYREQLETIEEQGGDGVVIEQEYIEEKPHVEQFIVELQQNETTNECSDKLRSLKEEQQETQESYPEDEIDDEYLLEHNAMAEDESPQGWKCFECKRMLHADVSYEGHLNMHKNIKPYKCTHCRSTFRCRNSLEHHASKRHEQGKTAQKCFTCDICDKPFRLATLLLEHRRAEHKTLLNCSKCTKSFKSEELLDEHMTLIHPPTNTTPIQCPFCAQPPLTKARLVEHLRQQHPTEHRKHLHTVGRPCDENKVTPWQCEECFRYYRTETLLRDHSNTHTNERPHSCSVCDKRFFTANNLRSHMRSMHQAEYEKRMAESLDSVVKCEVCKKKLLQKNLEKHMLTHERKEKQTEGGGGSTAKYLCAYCPRECRSQKTLNHHQKLHQSQESGIIYECTECERQYATQHHLEQHRKLAHKERDNVCVICGNAFKLKNQLVNHLKLHLEKNIACPKCDKKYARQFDLNVHLRTHTGELPFACHLCEKRFAIKVRLTYHLQKHLGVKHRCKECGAEFNSKQKLRAHCYKHTGMPYRCEICDNHGFANRDVFKRHLLRVHNSTMSDEDLVEMFQRNTGKSTRIRRIEDMHLVKKPSQTEDLNLKHEDESFLYNTEISMSFINQAKLGKHEEVHNPERTRNYPCDYCKSKFYTNYDKSHHVRRVHQGTERAFVCSVCGNAFKEKSQLQNHVKLHTQKNIQCQLCDKKYARQTDFQVHMRSHTGELPFACHLCEKRFAIKVRLTYHLQKHLGIKHECNICGSIYNSRGKLRMHMFKHNGMPYRCDECPTAEFSKRERFRLHITRVHSRTPSEEELTANFERNTGKAIHIKEVQELKL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -