Pcor025342.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pherbina coryleti
Gene Symbol
ZNF236
Assembly
GCA_943735905.1
Location
CALSEP010000984.1:74374-77137[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.014 2.2 10.1 0.5 5 23 70 88 68 88 0.96
2 16 0.00042 0.069 14.8 2.5 1 23 140 162 140 162 0.95
3 16 3.3e-05 0.0054 18.3 8.2 1 23 168 191 168 191 0.94
4 16 4.1e-06 0.00067 21.2 7.3 1 23 197 220 197 220 0.97
5 16 0.18 29 6.5 4.1 1 23 234 257 234 257 0.92
6 16 2.5e-05 0.004 18.7 1.7 1 23 375 397 375 397 0.99
7 16 0.00037 0.06 15.0 3.7 1 23 403 425 403 425 0.98
8 16 0.0027 0.43 12.3 0.2 1 23 437 459 437 459 0.95
9 16 0.38 62 5.5 0.3 1 19 467 485 467 488 0.82
10 16 4.3e-05 0.007 18.0 1.3 2 23 532 553 531 553 0.97
11 16 0.0076 1.2 10.9 0.5 1 23 559 582 559 582 0.96
12 16 0.0058 0.94 11.3 3.9 1 23 588 610 588 610 0.98
13 16 5.1e-07 8.4e-05 24.0 4.0 1 23 679 701 679 701 0.99
14 16 0.0052 0.85 11.4 2.8 1 23 707 729 707 729 0.94
15 16 3.9e-05 0.0063 18.1 0.2 1 23 736 758 736 758 0.98
16 16 0.014 2.4 10.0 3.6 1 23 764 787 764 787 0.89

Sequence Information

Coding Sequence
ATGGAGAATGAAAACGAAGAAGCTATCAGCAATTGCAACCTTAGCGATCTATCGAATCCATACCAAAGTAGTACAGATAGCAATGCAAACACCTGTATCAAAGAGGTTCAGTGTGAAAAAGGTGGAAGTAGTCTAAACTTTCAGGCACACCATGGTGCTTATAAACTTGCGGTACGGTCCACACAAAAACAAAGCCGTCCAGTGGCAGAGTGTGGCAGGCATTTTCAACGTATGGTGGACTTGCGAACGCATTTGAAACAACATGCAGTTCGTGATGAAAACATAAACAAGCGAGTTGACAAAGGATTGAAGCAACACAAATTGCCGGAGCGGGTACAGGACTCCTATGTTGATGATTGCTTAGCAGAAATATTGGATGCGAGAAAACAAAGTCTTTTTCTTCGTCGTGGACGCAAGTACGAGTGCGAGATTTGTGGCAAGAATTTCCAAAAACATTGTCTACTACAAAGGCATGCTGTGGTGCATAGGAGTGATAAACCTTTTCAGTGTAGCATATGCTCGAAATGCTTTAAACAAAAATCAAGTTTGCAGCGTCATTTCCAGCACAACCACATGCAAGGAATATCACACAAATGTTCCAAGTGCGACAAATGCTTCTCACAGAAAACAAATCTGTCTAAACATCTCCAGCGAGCGCATTCAGTGAATGCTAGCGCATCCAACTTTGTGGAAAGATCCTTTGCTTGTGACCGATGTAGCTGTGTTTACAAAAAATTAAACAGTCTTAACCGCCATAAATCACAATATCATCGAGCTGTTGAATCGGAGTCAGCACGCATAGCACAGCTAGCTGTTGCATATAGGGATGAAACTTTCGTTGATGATGCAGATGCATTAGCACGCAGTGTTTTAGTCGAACTTAAAAAACTGCAGGGAGGCATGGTGGCAACAGTACAGCCGACAGATAATGAACAGCAAAACACCAATTCAAGATTATTAAGCAACGATGAAACGCCTTCAGAGGCCTTTATAGCAACAGCTGAAACAATTGTGGATCCAGGCAAACTATATTTAGTTGATGTGTGCGATAAATTGAACCCCAAGTTTGAGCCTCATTCCATCACGGTGCAGTGCATACGGCGAAGCGATGGCATGTCTTTTTATGTTTGCGAATTTTGCGCTAAAGAGTTTCGGAAAACATATGATCTAATAAGACATCGTCGCACACATTTACAAGAGACGCCTTATAAATGTGTGCAATGCAGCAAGAGTTGCATAACCAAATCCAAACTTGAAGAGCATAAAAAGGTGCATACTTCGATTGATACAACACTTCCATGCAATCGATATAATTGTAGTATTTGTCAGCAAGTTTTCGCCTCCATTCGTCAATTAGATAAACACGCTAGCTTGCATGCTAGAACACATTCGTTGCTCTACGTCTGCTCAATTTGTGGGCGTTCAAATGGTACTCTGGGCGCCTTTTTAAAACATAAGCACAGAAGTCAGGATAACGAATTAGCAATGATTTTAAAATTACTACCAACACCCATTGATATATCTACAAAAGCTACTGAGAAAAGTGCAAGTCTTTTAACTTCCGACTCTAAACCAAAAATTCAGACAATTCTTAGATGTCGCACCTGTGAGCGCTCATTTGCTACAAAAAGCCTACTGAATTTGCATTACAAAATTCATTCAACACACAAGCAGTTCGCTTGTCCTAAATGCGCGTTGAAAAAGTTTCCTACAGAATCGCGTCTTCGGCGTCATTTACTCTCACACACCAATGAAAGAAATTTCAAATGTGCTTATTGCGAAAAAAACTACAAAAGCCGAGAACAATGCCGACAACACATGGAGGTGCATCTTAAGACACTGCTCAACGAAGCTGACGAAGAGCCCAAATTTCGGACGGAATTGAACCCAAAAGAATGTATTGTCGTAGTTCAACAAAAGGAGCAAGAAGCTCTTAAAATTATTGAACTACAAATGTTGCCAAAGTATCGCCGACATAGGCAACATAAACACATTAGCTCTAAAATATTGTCCTCCACTATAACTAAGTCTCAATACTCCTGTAGTTACTGTCAGCGTCAGTTTAAAAAGTCCAACAATTTGCAGCGTCATATACGCACGCATACCAAGGAACGTCCATTTAGTTGCAATCAGTGCGCAAAATCTTTTGCCTTGCAATCGACACTAAAGGAACATTGTCTGACACATGCGCAACAGCGCATTACATACGATTGTCAAGTGTGTGGCAAAAGTTATGCCTCTAAAAAGGTGCTTGTTTTGCATCTACGCATACACACCGGTGAGCGTCCGTTTAAGTGTCAATACTGTGAGCAGACATTCCGCACATCGGGCCATCATCAAGCGCACAGCAACGCCGCACATAAGCAACAGAACACGTAA
Protein Sequence
MENENEEAISNCNLSDLSNPYQSSTDSNANTCIKEVQCEKGGSSLNFQAHHGAYKLAVRSTQKQSRPVAECGRHFQRMVDLRTHLKQHAVRDENINKRVDKGLKQHKLPERVQDSYVDDCLAEILDARKQSLFLRRGRKYECEICGKNFQKHCLLQRHAVVHRSDKPFQCSICSKCFKQKSSLQRHFQHNHMQGISHKCSKCDKCFSQKTNLSKHLQRAHSVNASASNFVERSFACDRCSCVYKKLNSLNRHKSQYHRAVESESARIAQLAVAYRDETFVDDADALARSVLVELKKLQGGMVATVQPTDNEQQNTNSRLLSNDETPSEAFIATAETIVDPGKLYLVDVCDKLNPKFEPHSITVQCIRRSDGMSFYVCEFCAKEFRKTYDLIRHRRTHLQETPYKCVQCSKSCITKSKLEEHKKVHTSIDTTLPCNRYNCSICQQVFASIRQLDKHASLHARTHSLLYVCSICGRSNGTLGAFLKHKHRSQDNELAMILKLLPTPIDISTKATEKSASLLTSDSKPKIQTILRCRTCERSFATKSLLNLHYKIHSTHKQFACPKCALKKFPTESRLRRHLLSHTNERNFKCAYCEKNYKSREQCRQHMEVHLKTLLNEADEEPKFRTELNPKECIVVVQQKEQEALKIIELQMLPKYRRHRQHKHISSKILSSTITKSQYSCSYCQRQFKKSNNLQRHIRTHTKERPFSCNQCAKSFALQSTLKEHCLTHAQQRITYDCQVCGKSYASKKVLVLHLRIHTGERPFKCQYCEQTFRTSGHHQAHSNAAHKQQNT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
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90% Identity
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80% Identity
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