Basic Information

Insect: Pherbina coryleti
Gene Symbol: -
Assembly: GCA_943735905.1
Location: CALSEP010000848.1:356851-358803[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 3.2e-06 0.00052 21.5 2.4 3 23 212 232 210 232 0.96

2 11 1.3e-05 0.0021 19.6 0.1 1 23 266 288 266 288 0.98

3 11 2.2e-05 0.0036 18.8 1.0 1 23 297 319 297 319 0.99

4 11 0.00026 0.042 15.5 3.3 1 23 325 347 325 347 0.98

5 11 3.3e-05 0.0054 18.3 1.6 1 23 353 375 353 375 0.98

6 11 3e-07 4.9e-05 24.7 0.6 1 23 381 403 381 403 0.96

7 11 0.023 3.7 9.4 1.1 1 23 409 431 409 431 0.98

8 11 0.00014 0.022 16.4 6.4 1 23 437 459 437 459 0.98

9 11 4.4e-05 0.0072 17.9 2.4 1 23 465 487 465 487 0.98

10 11 5.5e-05 0.009 17.6 1.5 1 23 493 515 493 515 0.98

11 11 4.7e-05 0.0077 17.8 0.2 1 23 521 543 521 543 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	3.2e-06	0.00052	21.5	2.4	3	23	212	232	210	232	0.96
2	11	1.3e-05	0.0021	19.6	0.1	1	23	266	288	266	288	0.98
3	11	2.2e-05	0.0036	18.8	1.0	1	23	297	319	297	319	0.99
4	11	0.00026	0.042	15.5	3.3	1	23	325	347	325	347	0.98
5	11	3.3e-05	0.0054	18.3	1.6	1	23	353	375	353	375	0.98
6	11	3e-07	4.9e-05	24.7	0.6	1	23	381	403	381	403	0.96
7	11	0.023	3.7	9.4	1.1	1	23	409	431	409	431	0.98
8	11	0.00014	0.022	16.4	6.4	1	23	437	459	437	459	0.98
9	11	4.4e-05	0.0072	17.9	2.4	1	23	465	487	465	487	0.98
10	11	5.5e-05	0.009	17.6	1.5	1	23	493	515	493	515	0.98
11	11	4.7e-05	0.0077	17.8	0.2	1	23	521	543	521	543	0.98

Sequence Information

Coding Sequence: ATGTGTCGAACCTGCATGATGCAGGATCAGAGCTTTTACTCGATCTATGAAAATGCTGAGAATCAGTTGAAAATCTGTGAAATGCTAGCCACAGTGACCCCGCAGCTACTCATGCAGAGCAATGATCAACTGCCACAATTACTCTGTGTGGCTTGTCTAAACAAACTTAATATTGCGTACAGCTTCCAACAAATGTGCATCGCCTCTGAGAAACAATTACTTAACATATTATGCGCCGAGAGCACTTTGATATCCAACGAATTGTCTTATCCTGCTAATACTGAAATTGGTCAGGATCCCTTACTTGTAGAGGAACTTCCTAAGTTCACGATATGTATTAAAAGCGAAGACAATACCGAGCCAGAAGAAGATGTGAAGGATATTATTGTGGAGGATTATGCACTCAGTGCACAGCAAGTGGATGCAACAAAAATAGATACAGCGAGCCAGTCTGAGAACTCCTGCGCTATGAATACAAATAGAAAGTCTATTGGAAGTGAAACAACTGAAGACGATGATGACGACGAAGATGAGCTGCAGAAACCGGCACGTATCTCTGACATGCATAATGAAACGGGTGTAAATGAAATAGAAAAACCATCTCCACGCAATCGCCGTAAGCCCAAGCTAGCCTGTCCTCACTGCGACAAGGTTTTTGATCGCGTCTACCATTTTAAGCGGCACGCTCGTGTACATAGTGAAAACGGACGTTTCAAGATAAAACCCTCAACGGAATGTGAAACTCTAAAAACGCGCAAAAAGATCAGAAAACGTCCGTCACCGCCGCCTGATGGTTTTAAGTGCCCAGAGTGTCCACGTCGCTTTGAAAAAAGTCAGTCAATGGCAGCACACATTCAGGTTCATCGAAAAACCTTGAATATTCAGACATTCAAATGCGATATGTGCCCAAAAATATTTCGCAAATTTACGCAACTCGCTAATCATGCTCAAACTCATCCTGAAAATCAAAAACATAAGTGTACACTTTGTGAAAAAACATTTGCATTGGAGGCGCATTTTATAGAGCACATGAATAAGCATAACGGTTTGAAACCATACGTATGCGTCTACTGCAACAAAGCATTTCAACACAACAGCGTGCTCTTAGATCATCAACGATCTCACACCGGTGAAAAACCATATCTATGCGCGCAATGTGGAAAGTCTTTTAAGAATGCTGGCAATTTGAAACAGCATCAGCTGCGACACTCTGGGGAAAAACGATTTCAGTGTCCAGAGTGTCCTAGTAAATTTGCCTGCCAATCTGACCAGATCAAACATACGGCCACACATCGCGCACTAAAACCGCATAAGTGTGAAATTTGTGGTTCCTGCTTTACACGCTCGACCTCCCTTACCTTGCACAAAAAAAGACACATTGGCGATCGACCGCACAAATGTAAAGAGTGTAGCATGAGTTTTGTTTTTGCCGCTACACTGAAACAGCATCAACTcacacatactggtgaaaaaccgcacaaatgcacattttgtgagcgcgcttttgctttgaatggtgatttgaataaacatctacgtttacatgtgggtgaaaagacctacatgtgtgaTCAGTGTCCCGAAAAATTTAAATACTTGGCGGAATTGCGCGATCATCAGGCAATGCATTATAAACAGCAACAAGCTGCCGGTGCCGCTGCATCTGCCGTGGCTGCCACATCCGAATCGAAAGATGAGGCTTAA
Protein Sequence: MCRTCMMQDQSFYSIYENAENQLKICEMLATVTPQLLMQSNDQLPQLLCVACLNKLNIAYSFQQMCIASEKQLLNILCAESTLISNELSYPANTEIGQDPLLVEELPKFTICIKSEDNTEPEEDVKDIIVEDYALSAQQVDATKIDTASQSENSCAMNTNRKSIGSETTEDDDDDEDELQKPARISDMHNETGVNEIEKPSPRNRRKPKLACPHCDKVFDRVYHFKRHARVHSENGRFKIKPSTECETLKTRKKIRKRPSPPPDGFKCPECPRRFEKSQSMAAHIQVHRKTLNIQTFKCDMCPKIFRKFTQLANHAQTHPENQKHKCTLCEKTFALEAHFIEHMNKHNGLKPYVCVYCNKAFQHNSVLLDHQRSHTGEKPYLCAQCGKSFKNAGNLKQHQLRHSGEKRFQCPECPSKFACQSDQIKHTATHRALKPHKCEICGSCFTRSTSLTLHKKRHIGDRPHKCKECSMSFVFAATLKQHQLTHTGEKPHKCTFCERAFALNGDLNKHLRLHVGEKTYMCDQCPEKFKYLAELRDHQAMHYKQQQAAGAAASAVAATSESKDEA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01181338;
90% Identity: -
80% Identity: -