Pcor003244.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pherbina coryleti
Gene Symbol
-
Assembly
GCA_943735905.1
Location
CALSEP010000084.1:459399-473354[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 5.3 8.6e+02 1.9 1.0 10 23 32 46 30 46 0.92
2 18 7.6 1.2e+03 1.4 0.2 1 9 126 134 126 144 0.85
3 18 0.0075 1.2 10.9 1.8 2 23 195 216 194 216 0.97
4 18 5.9e-05 0.0096 17.5 1.1 1 23 223 246 223 246 0.96
5 18 0.0001 0.017 16.7 1.8 1 23 256 278 256 278 0.99
6 18 0.59 97 4.9 4.1 1 23 302 324 302 324 0.96
7 18 3.8e-06 0.00061 21.3 1.5 1 23 331 353 331 353 0.99
8 18 7.9e-05 0.013 17.1 3.0 1 23 359 381 359 381 0.99
9 18 0.088 14 7.5 3.4 2 23 388 410 387 410 0.96
10 18 0.043 7 8.5 0.5 1 23 416 439 416 439 0.84
11 18 7e-06 0.0011 20.4 0.4 1 23 520 543 520 543 0.96
12 18 0.019 3.1 9.6 0.2 3 23 552 573 550 573 0.90
13 18 0.00014 0.023 16.3 0.1 1 23 585 608 585 608 0.95
14 18 5.7e-05 0.0092 17.6 6.8 1 23 619 642 619 642 0.97
15 18 3.3e-05 0.0053 18.3 0.5 1 23 648 670 648 670 0.98
16 18 0.00074 0.12 14.1 1.3 1 23 677 700 677 700 0.93
17 18 6e-05 0.0098 17.5 3.8 1 23 706 728 706 728 0.98
18 18 1.8e-06 0.0003 22.3 0.3 1 23 734 756 734 756 0.98

Sequence Information

Coding Sequence
ATGCGAGGAACTGCTACACCAACAACTGAAACTCTTCCGCAGCCATTTTACTACAAATCAAGCACTCAGGTACAGGAATACAGCCTAATCTACTTCAAACGTTTTTCATTACTTAAATCGCATAAATTGCGCTCACATGCTACGGAATGCGAAGTAGATGAGACAATTCCAAAATCTCCAACCAATACAAAATGTGATAAAAAATATCAATTGACTCTTAAATTAAACTTCGATAGTGATATTGATGCTGATACAGCACCGTCCGCGGAGGATTCTGACACCTCAATTATTGATGTGGAATCAATGCCAACTGATTTAAATACGCTTTATGATTCATTGACTAAACTTAAACAGACACCTATTGGTGAAAATGTTTATAAATGCCGTATGTGCCAAAAAATCACTCTTGAATTGAGAAACCATCTGCAACACATCATCGCTCATACCGGTCAGAAATGGAACACATGTGTGCTATGTGAAGATGTTTTTCTGGGTGCAGGCAGCTTAGATGAGCACATGGCGAAAGCACATGCCAAACAAAACGAGGGTGACGTTGATGAGTATCTCCCATCCGGAATAATGAAGTGCAAAGAGTGCGGTGCCTGTTTTTTTGGTGTATCCGAATTTGATCGACACAAGCGTTGGCACGATGGGCACCAAACACAGCACAATTGCAACATTTGTCAAACAAGCTTCACAACGCCAACCATACTTCAAAAGCATATACGAATTATACACAACAATAGTAAAAATCTGCCCAAACGCTTTAAATGCTCCCTTTGCAAAGAAAGCTTTGCCTTTCAAATTTTACTCACCAATCATAAGCGTTCACATCCGGAATTATTTGAACTTATAGAGCGTACCACTATCATACATCGCAATAAGGACAGCAATAAAATCCTTTATGCATGTCGCACATGCGGTAAATCAACGCATACACAAACGACGCACTTGGAACATTTGCGCATCCATAGCTCAGAAAGACCGATGTACAAATGTTCACTCTGTTCAAAACAGTTTACAGCCAAATCCACCTTGAAGGCACACATTCGATTGCATAGCAATGAGCGTCAGTATAAATGTGAGATTTGCGAAATTAGCTATCGTCATCGACGTACATTGCGCCTGCATTTAATGAAACACACCGGCGAGCGACCAATTAAATGCAAATATTGTGGTCATGGTTTTATGGATCAGAATCTTTGTACAGAGCATGTGCGACGCCTGCACACAGGAGAGACTCCGTATCAGTGTGAAATCTGTGGTGAATGGTTTACCACAGCTAGCCATGTGCCAATGCATAAAATGCAAAAACACAATGTAAACACAAGAGTGAAACGTACAGTGGATATCATAGTGGAGAAGTCGATGGACAAAGTGTTGGAAGAAATTTTCAAATATCGAAAAAACGTTTTAAAATGTGCCGCTACGCTACAGGCGGTACTAGGCAATGAAGAGCTGCCAGGTGATGAAACCGCTTCAAAGGTACCAATTCAGAAGGGAGAAACATTGGAAAATCTTAACGAAAACATTATGCATCGCGATTGCAGACGTCCTTATGCCTGTGACAATTGCGACAAATCATATAAACGTATTGACTTGCTGCGTAATCATCTGCGACTTGTTCATGATAGCAACGGTCGGCGTGTTGAATGCATTGATTGTGGTAAGCTATACAAGACAGAAGCCACCTTAAAGCAGCATCGTATAAATCTGCACTTTATTGAAGACAAAATTGAACAAATCAAAGATTATGCTTGTGAGCAATGTGATGCGTCATTTGTAAGAGCAAAAAGTTTAGCGAACCACTACATATCCAAGCACAGTACATATAAAGCCAATAAAGTGCAGGATTTTAAGTGCTCCAAGTGTAACAAACATTTTAAAAATCGCTTCAATCTTGAGAATCACACGTTGCGCTATCACTCGAAGGAGAGAAATTTCGAATGTAGCCTTTGTGAAATGAGTTATGCGCGAAAGTTTATGTTGGTTACGCATATGCGAATTCACTGTACTGACGCCGAAAAATTCCTATGCGATCAATGCGGTCGTGGATTCACCCATAAATGTGATGTGGCCGAACATATTCGTGCTGTACATTTAAAAACTAAATCGTTTAAGTGCGAACAATGCGACCAATCATTTGCGACGGCAAAAACACTTCGACATCATACATACCGGCATACGGGCGAGAAACCATATGCATGCGATATATGCGGCCAAACTTTTCGACAACCTACAGCGATGAAAGTGCATAGAAGAAGACATAGTTTAAGTTCAGAAGAAGAGTAA
Protein Sequence
MRGTATPTTETLPQPFYYKSSTQVQEYSLIYFKRFSLLKSHKLRSHATECEVDETIPKSPTNTKCDKKYQLTLKLNFDSDIDADTAPSAEDSDTSIIDVESMPTDLNTLYDSLTKLKQTPIGENVYKCRMCQKITLELRNHLQHIIAHTGQKWNTCVLCEDVFLGAGSLDEHMAKAHAKQNEGDVDEYLPSGIMKCKECGACFFGVSEFDRHKRWHDGHQTQHNCNICQTSFTTPTILQKHIRIIHNNSKNLPKRFKCSLCKESFAFQILLTNHKRSHPELFELIERTTIIHRNKDSNKILYACRTCGKSTHTQTTHLEHLRIHSSERPMYKCSLCSKQFTAKSTLKAHIRLHSNERQYKCEICEISYRHRRTLRLHLMKHTGERPIKCKYCGHGFMDQNLCTEHVRRLHTGETPYQCEICGEWFTTASHVPMHKMQKHNVNTRVKRTVDIIVEKSMDKVLEEIFKYRKNVLKCAATLQAVLGNEELPGDETASKVPIQKGETLENLNENIMHRDCRRPYACDNCDKSYKRIDLLRNHLRLVHDSNGRRVECIDCGKLYKTEATLKQHRINLHFIEDKIEQIKDYACEQCDASFVRAKSLANHYISKHSTYKANKVQDFKCSKCNKHFKNRFNLENHTLRYHSKERNFECSLCEMSYARKFMLVTHMRIHCTDAEKFLCDQCGRGFTHKCDVAEHIRAVHLKTKSFKCEQCDQSFATAKTLRHHTYRHTGEKPYACDICGQTFRQPTAMKVHRRRHSLSSEEE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-