Pcor005291.1
Basic Information
- Insect
- Pherbina coryleti
- Gene Symbol
- -
- Assembly
- GCA_943735905.1
- Location
- CALSEP010000139.1:67077-69839[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.025 4 9.3 0.3 1 23 117 140 117 140 0.94 2 13 0.00045 0.073 14.8 0.4 2 23 146 168 145 168 0.94 3 13 3.9e-05 0.0064 18.1 2.5 2 23 178 200 177 200 0.95 4 13 3.7e-07 6.1e-05 24.4 2.2 1 23 369 391 369 391 0.98 5 13 1.9e-06 0.00031 22.2 3.5 2 23 398 420 397 420 0.94 6 13 0.00018 0.03 16.0 2.6 2 23 427 449 426 449 0.96 7 13 4.5e-05 0.0074 17.9 4.0 1 23 454 476 454 476 0.97 8 13 0.00041 0.066 14.9 0.3 1 23 481 505 481 505 0.92 9 13 0.0017 0.28 12.9 1.4 3 23 511 531 510 531 0.99 10 13 0.00014 0.023 16.4 1.5 1 23 537 559 537 559 0.98 11 13 7.2e-07 0.00012 23.5 2.6 1 23 565 587 565 587 0.96 12 13 4.7e-07 7.7e-05 24.1 3.8 1 23 593 615 593 615 0.99 13 13 0.14 23 6.9 0.1 1 23 620 643 620 643 0.87
Sequence Information
- Coding Sequence
- ATGGACAAAATATGCCGCGTATGCATGAAAAGCGAAGTGGAGCTATATCTAATATTTGATGAAAAATATGCCGTGGAAACAACCAACTTGGCTGGAATCATCACAGAGTGCACAATGTACAAGGTCAATCGTTACGATGAGCTGCCTCATCAGATCTGCGCCAGCTGTATGGGGCTGGCGAAGAGCGCCTTTAGTTTTAAACGCAACTGTGAAAAATCATATCGTTTGTTGATTGGTATGCTAGAAGAAGGCATTAGTGAGAAACAAAACAAAGCACCTAGCCATATAAAGTTAGAGGCGGATTCGTCGCAGGCTGTAAAAAGCACGCAAACGGAGGACAGCTCCTTGTATCCATGCGAGCGTTGCGATCAGAAGTTTTTTGCATTCGACGCCTTAAGAGTTCATCGCGAAAACGACCACAAAGGCAGTGCCATCGTGTGTCGCTTCTGTTCCAAAACCTTTAATCGTGTGGGCTACTTGAAGACGCATATTGCGGTGTTTCACCCCGAGACAGGCTACACATCGCATAACCAGTGTAACATCTGCAAGCGACAATTCACAAGACGCGAACACATGCGTCGCCATCTAGCAGTAATACATAAAATAGTAGAAATTGTTGATGCTCCTCAGTTAGCTGAGGATGAGACATCAAAGAGTGAACCACTGGAGCCATTAGAAGAGCCGAAAATACAAGAGAATCATTGCGAAAGTATATTAGAGCAGGAATCTGCGCTAGAAAATAATTCATCTGCAGCTGTGGCGACCAATGGTGACAACTGTTTTAATTACTCAAGTCAATCAGAGGGCGAAGATGAGAGAATGGATACTCTCAGTGATGAGAAACCTGTTTTAACTGACGATGAAGATGAGAAACCATTGTCCAACTTTATAGGACAACCGCGTAAAAGCTTTGTCGAAGTTTTAATTGAGGAGGGAAGAAGTGATGACCCTGTTACGACATTAACATTCAACAATATCAAAAATGAATTGACTGCATCTCCTACACACACTTTAGATATTGATGCACTAGATGTGCAACAAAGCAAAAGTCCCATACGCTCTCAAAAATCTGACTATGGCTCATCAGCAGACGAGGAAATAGAACATAAATGCCCCATATGCGATAAAAATTTTCAACGCAAGGAAACGCTTGAACGTCACATGGCAAAACACACGCAGGAAAAAAGTTGTACATGTAAAATCTGTGGGAAAAGTTTTACCCGTGCTAATTTCCTTAAAAACCACATGAAAGCTACTCATGATGATGCCAGGTGTTTGAAATGCAACGAATGTGACATTGAATTCACGCACATCACGCAGCTAAAGCGACACAAAGAAACAAAGCATAACACTAAGAATCACACCTGCGAATTATGTCAAAAAAGCTTCACCACAAAACTATACATGCAGCGGCACATGGAATCACACAATAAAAAGCGTTTCGTTTGCAAGGAATGTTCCGAACGTTTTTTGACCAAGGATGAACTGAATGCACACATAAAATCCGAAAATCACGATAAGCCGTTACTGTGTCCTGAATGTGGACTACGTTGCAAGACAAACAACATACTTATGGTGCACATGCGTCGACACAAGGGTGAAAAACCATTTAAGTGCAAATTCTGCAGTAAAGGCTTTCCACGCATGGACGATTTGCGCATTCACGAAAAATATCATACCGGTGAGAAGTCTCACTTTTGTGAAACCTGTGGCAAAGGATTTCAGCGGAAATACAATCTAACCATACACATGCGTGTGCACACTGGAGAGAAGCCCTACAAATGTCCACACTGTCCGCACGCTTTCACTCAAAGTAACGATTTGAAATCGCACATACGACGTCACACAGGTGAACGTTTTCGTTGTGAAATCTGCGGTGCTCCATTTCTGCAGGGCTACCAAATGCGTCAGCATAAGCTAGCCGAGCATGGCGTCAAAGAGAATCCACCAACACAACGTGTGGAAAAATATACCTCGCCCGAGGAACAAGAGCAACAAATCAAACAAAATCTACAACGAGAACTAGCAAAAACTATGCAATTTACTTCGGACCCAGCTTTAGATGCTACGCTGGCAAATTTGGACGAGATCTGTAACAATACTTCGCTGGAACCACCAACAGTGCTTGAAAAAGAAATACATTTCTTAAACATTTAA
- Protein Sequence
- MDKICRVCMKSEVELYLIFDEKYAVETTNLAGIITECTMYKVNRYDELPHQICASCMGLAKSAFSFKRNCEKSYRLLIGMLEEGISEKQNKAPSHIKLEADSSQAVKSTQTEDSSLYPCERCDQKFFAFDALRVHRENDHKGSAIVCRFCSKTFNRVGYLKTHIAVFHPETGYTSHNQCNICKRQFTRREHMRRHLAVIHKIVEIVDAPQLAEDETSKSEPLEPLEEPKIQENHCESILEQESALENNSSAAVATNGDNCFNYSSQSEGEDERMDTLSDEKPVLTDDEDEKPLSNFIGQPRKSFVEVLIEEGRSDDPVTTLTFNNIKNELTASPTHTLDIDALDVQQSKSPIRSQKSDYGSSADEEIEHKCPICDKNFQRKETLERHMAKHTQEKSCTCKICGKSFTRANFLKNHMKATHDDARCLKCNECDIEFTHITQLKRHKETKHNTKNHTCELCQKSFTTKLYMQRHMESHNKKRFVCKECSERFLTKDELNAHIKSENHDKPLLCPECGLRCKTNNILMVHMRRHKGEKPFKCKFCSKGFPRMDDLRIHEKYHTGEKSHFCETCGKGFQRKYNLTIHMRVHTGEKPYKCPHCPHAFTQSNDLKSHIRRHTGERFRCEICGAPFLQGYQMRQHKLAEHGVKENPPTQRVEKYTSPEEQEQQIKQNLQRELAKTMQFTSDPALDATLANLDEICNNTSLEPPTVLEKEIHFLNI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01415221;
- 90% Identity
- -
- 80% Identity
- -