Basic Information

Insect: Pherbina coryleti
Gene Symbol: -
Assembly: GCA_943735905.1
Location: CALSEP010000556.1:7109-29125[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 7.7 1.2e+03 1.4 0.0 6 21 45 60 45 61 0.91

2 18 2.1e-05 0.0034 18.9 1.7 1 23 343 365 343 365 0.96

3 18 6.5e-06 0.0011 20.5 5.2 1 23 371 393 371 393 0.98

4 18 0.0014 0.22 13.2 1.7 2 23 400 421 399 421 0.96

5 18 0.00049 0.08 14.6 0.1 1 23 427 449 427 449 0.97

6 18 0.00038 0.062 15.0 0.4 1 23 455 477 455 477 0.98

7 18 2.2 3.7e+02 3.1 1.6 1 23 607 630 607 630 0.92

8 18 1.2e-06 0.0002 22.8 2.2 1 23 751 773 751 773 0.98

9 18 6.6e-07 0.00011 23.7 2.4 1 23 779 801 779 801 0.98

10 18 0.0004 0.065 14.9 0.6 2 23 808 829 807 829 0.97

11 18 0.00091 0.15 13.8 0.0 1 20 835 854 835 855 0.95

12 18 2e-05 0.0032 19.0 0.6 3 23 903 923 902 923 0.97

13 18 2.4e-06 0.0004 21.9 2.0 1 23 929 951 929 951 0.98

14 18 5.3e-05 0.0085 17.7 2.6 1 23 957 979 957 979 0.97

15 18 0.048 7.9 8.4 9.5 1 23 985 1008 985 1008 0.98

16 18 0.00021 0.035 15.8 3.7 1 23 1046 1068 1046 1068 0.97

17 18 0.0026 0.42 12.4 5.1 1 23 1074 1096 1074 1096 0.97

18 18 9.8e-06 0.0016 20.0 0.3 1 23 1102 1124 1102 1124 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	7.7	1.2e+03	1.4	0.0	6	21	45	60	45	61	0.91
2	18	2.1e-05	0.0034	18.9	1.7	1	23	343	365	343	365	0.96
3	18	6.5e-06	0.0011	20.5	5.2	1	23	371	393	371	393	0.98
4	18	0.0014	0.22	13.2	1.7	2	23	400	421	399	421	0.96
5	18	0.00049	0.08	14.6	0.1	1	23	427	449	427	449	0.97
6	18	0.00038	0.062	15.0	0.4	1	23	455	477	455	477	0.98
7	18	2.2	3.7e+02	3.1	1.6	1	23	607	630	607	630	0.92
8	18	1.2e-06	0.0002	22.8	2.2	1	23	751	773	751	773	0.98
9	18	6.6e-07	0.00011	23.7	2.4	1	23	779	801	779	801	0.98
10	18	0.0004	0.065	14.9	0.6	2	23	808	829	807	829	0.97
11	18	0.00091	0.15	13.8	0.0	1	20	835	854	835	855	0.95
12	18	2e-05	0.0032	19.0	0.6	3	23	903	923	902	923	0.97
13	18	2.4e-06	0.0004	21.9	2.0	1	23	929	951	929	951	0.98
14	18	5.3e-05	0.0085	17.7	2.6	1	23	957	979	957	979	0.97
15	18	0.048	7.9	8.4	9.5	1	23	985	1008	985	1008	0.98
16	18	0.00021	0.035	15.8	3.7	1	23	1046	1068	1046	1068	0.97
17	18	0.0026	0.42	12.4	5.1	1	23	1074	1096	1074	1096	0.97
18	18	9.8e-06	0.0016	20.0	0.3	1	23	1102	1124	1102	1124	0.98

Sequence Information

Coding Sequence: ATGCCACTGATAGTAAATGCAGACGGAAGTGTGCAAGAAACTATCACTAAGATAAATTTTCGACAGGAGAAGGAACCGAGCAGAGAGCTCCCTGAATTTGAATTAGAACCAGATGATGACTACGATGACTGCTGCGGTGAAGTTTTTGTAACGTATAGCGAACATTATAAGCACATAAAAGAAGAGTTCATTAATAATGAGTATGAGACTAAAAGCAGCGAAAGTTTCGAAAGAACTATATCGGTAGATAACAGCATTTGTGAAGAAAACTATGAAATAAAACAAGAAGACGATTTGCAAGAATTTATGAAAATTGAGATACAACCAACAGTGTTACAGACTGCTGAAGATCCGTTTTGTGAAATTGAACAAATTCTAATTCAGGAAACAGTTCATTGTAAGGAAACAGATATTGAGTATGAAGAACTAAGTAGCGAAGAAAAAACTGTTGATACTTCTTTTCTATTGAGCAGCGAAGACAAATTTGAAAAGCAGCATTATCAGCATACTCAAGATGAAAATATGTATGCCGCCGACGGGAGCGACACTAAAGCAGAGTTTAAATTTCTATGCAGCTCTTTAGATGGCAGTAAGGAACAAGAGGATGAAAAAGCGGAATTCTCAGAAATTCAAAGCTTTGCTGAAGTTGTCATCAGCCCAGACTTCAAAGAAGTTCAAGAAGAATATTTTGAAGAAATTGAAGAAGTAATAATCAATAATGGAGCATATTGTGACGAAAAACCTTTTGATTGCAAACTAAAATCAAGCGAAATAAGAGAACAACTTGACGAAGAGATTGAAACAGATGTTGACCTCAATATGGAAGACATAATAGTTGATGACTTTGATGTTCACAAACATATAAATAAAACGTTTGATGATTCTGATGTGCAGGCAATTCACGAAAAAGAAAACAACAATAAGGACAAATTTTATAGACAATATCAATTTAAAGATAAGGAAAAACCATCGACATCGGAAGAATATCGTACAAAAAAATATAGAAAAACTGCCCCTGCAGAAGTATTCAAGTGCAATATTTGCGATAAAAAGTTTCCGTACAAAGACAGGCTCAAAAAACATAGCATTATTCACTCAGAGGAACGTAAGCATAAATGCCATTTATGTAACTTCGCCTTTAAAGACAGCTCCAATTTACGTGCTCACATGACACGTCATACAATGCAGAAGAATATTAGCTGTGACATATGTTCGAAAAAGTTTTTTACCCGATCCGAAGCTAAACAACATAAGCGTTTACATACTGGTGAACGACCGTTTATTTGTACTACTTGCGGCTTGGCTTTTATCAGCTCTGGTGCTATGACTGCGCATGCCAAACGACATTACTCTGAACCACCCTTCAAATGCAATTATTGCGAAAAAGGTTTCTACGGAAAAGCTGATTATCTGGATCACTTGCTAGTGCATACTAAAGAAAAACCTTATGTTTGTCATATATCTGTCGCCAACATTCATTGTAGCCGTATTTGCGAAACTTGCCGGAATACACTAAGAAAAGCGCGCAGTCGTAATGAATCCAACGTGGAGCGGAATGAAGTCTCAAATTATTTACCAACAACGCCCAGCGATGAAATTAGCGAAGAATTGGATGAACTTCCAACTTGTACCAGCCGTAATGCAAACATCGAAAGCAACGAACTCATTGAAAATATAAATGATCATATTATTCCTCATCTACCAAACCAAATTCGACACAAAAATTTCCGCGAGCTCTCACAATTTCAACTGGCCGCTGATGACGCTTACGATGCACGCTGTGGCGAAGTCTATATAACGCTAAATCGAGTGCTTGTATTTCATTGCTCACTTTGCGACAATAAATATGGAAGTTTTGATTATTTTCTGGAACATTTGTCCGCTCTGCATTATAAAGATATCCAGGAGGAAGTAATTGAAATCGATACTGAAACTGAAGGAAGCGAAAGCGAATCGAAGGCTGTATTTCTTGATTATAGTTACGAAGAACCGGGCCAGGAACAATACGATGAAAAATATGACGAAATGTTGAAAAGCTCTAAAGAGGATGTTAAGCCAAACATTGATCAAATTGAAGAAGAATATTTGGAAGAAATCGAAGGGTTAGAGATGGTGGATGCTGAGCACTTTGCAGAGGAATTCGAAGAATTTAATTTGGAGAAAATTAAAGAAGAAATTGAAATTGAGGAACAAACAACGTCCAGCACCAGTACTAAGTACGAAATAGAATATCAACGGAGCTCGGAGGTGTATAGATGCGATAAGTGTGGTAAAATGTTTGTATCAAGATCAAAATTAAAGAAACATTCCATAACGCACTCTTCCGAACGAAAGCATAAGTGCAAAATTTGTGGATTTGCCTTCAAGGAGCGCTCAAATTTAAATGCTCATTTGCGTCGTCATTCAGGTCAAAAAAAAATCAGCTGTGAAATGTGTCCAAAGAAATTCTTTACAAACACTGAAGCCGCGACACATCAGCGAACTCATACCGGTGAACGACCGTACATTTGCTCATACTGTGGCACAGCTTTCGGAACTTCTGGTGCGCTTAATGAGCATGTCATTGACGATGACAGCAGAGAGGAATTGAACTGCCCGGAGAAACTAAGAGAAAAAATACCAACACAAAACACAACTGTTGTACAAGAATCAACGGAAGCAAATGATGGCAGTAAGAAAAAAAAGAAAAAACGCACTCCAGGTTTTTGTGAAATATGCAATCGTTCCTTTAATGATCTATATAACCTGCGCGTACACAAAATGATTCACACCGGTGAAATGCCATTCCAATGTGAGGAATGCGGCAAACGTTTTCGACAATATAACAAATTAAAAATACATCGTATCACTCACACCAATCAAAAGCCCCACACCTGCGATATATGTGGAAAAGGATTCAGATTTCGCAACTATCTCTCAGTACACAGACGCCTTCATTCCGGTGAAAAACCGTACAAATGTAAATATTGCAACGAACATTTTCATTCGTTACATAATCGTCGCATACACCTCAAGACGCAGCATTCGTGTGAAATGATTGGTTCTGCTACGTATACATGTGAAATCCGTGAAAATATACATACAAAGCCTTACGATTTGCAAATGCACATGGTACAAAATGCAAAGCAACTCAATTTTCCTTGCGACCTCTGCGACAAACGTTTCTACACACAATGTCAGTTAAAGGATCACAAATTGTCGCATTGCAAAAATAAGCCACACGAATGTGAGTTGTGTCACATGCGTTTTCAACGTAAAACTAATTATATACAGCACCTGAAAATACACTCGAATGTTAAGGCGTATATTTGCCAGATATGCAGCAAAGCTTTTGCCCAAAAATCTGGACTTTATGGACATATGAAATCGCACAGTGGCACAGTCATGGGCACTGCAAATGTGACATTTTAG
Protein Sequence: MPLIVNADGSVQETITKINFRQEKEPSRELPEFELEPDDDYDDCCGEVFVTYSEHYKHIKEEFINNEYETKSSESFERTISVDNSICEENYEIKQEDDLQEFMKIEIQPTVLQTAEDPFCEIEQILIQETVHCKETDIEYEELSSEEKTVDTSFLLSSEDKFEKQHYQHTQDENMYAADGSDTKAEFKFLCSSLDGSKEQEDEKAEFSEIQSFAEVVISPDFKEVQEEYFEEIEEVIINNGAYCDEKPFDCKLKSSEIREQLDEEIETDVDLNMEDIIVDDFDVHKHINKTFDDSDVQAIHEKENNNKDKFYRQYQFKDKEKPSTSEEYRTKKYRKTAPAEVFKCNICDKKFPYKDRLKKHSIIHSEERKHKCHLCNFAFKDSSNLRAHMTRHTMQKNISCDICSKKFFTRSEAKQHKRLHTGERPFICTTCGLAFISSGAMTAHAKRHYSEPPFKCNYCEKGFYGKADYLDHLLVHTKEKPYVCHISVANIHCSRICETCRNTLRKARSRNESNVERNEVSNYLPTTPSDEISEELDELPTCTSRNANIESNELIENINDHIIPHLPNQIRHKNFRELSQFQLAADDAYDARCGEVYITLNRVLVFHCSLCDNKYGSFDYFLEHLSALHYKDIQEEVIEIDTETEGSESESKAVFLDYSYEEPGQEQYDEKYDEMLKSSKEDVKPNIDQIEEEYLEEIEGLEMVDAEHFAEEFEEFNLEKIKEEIEIEEQTTSSTSTKYEIEYQRSSEVYRCDKCGKMFVSRSKLKKHSITHSSERKHKCKICGFAFKERSNLNAHLRRHSGQKKISCEMCPKKFFTNTEAATHQRTHTGERPYICSYCGTAFGTSGALNEHVIDDDSREELNCPEKLREKIPTQNTTVVQESTEANDGSKKKKKKRTPGFCEICNRSFNDLYNLRVHKMIHTGEMPFQCEECGKRFRQYNKLKIHRITHTNQKPHTCDICGKGFRFRNYLSVHRRLHSGEKPYKCKYCNEHFHSLHNRRIHLKTQHSCEMIGSATYTCEIRENIHTKPYDLQMHMVQNAKQLNFPCDLCDKRFYTQCQLKDHKLSHCKNKPHECELCHMRFQRKTNYIQHLKIHSNVKAYICQICSKAFAQKSGLYGHMKSHSGTVMGTANVTF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -