Pcor012493.1
Basic Information
- Insect
- Pherbina coryleti
- Gene Symbol
- -
- Assembly
- GCA_943735905.1
- Location
- CALSEP010000387.1:840533-848275[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5e-12 1e-08 36.0 0.0 4 38 14 48 12 52 0.93
Sequence Information
- Coding Sequence
- ATGCCAAAAAAAGGAGAAATAAGGAATTGGGAAGCAGGGGATATGAGAAGAGCTATACAGGCTGTTAGAGATGGTCAAATGGGTATTCTCTTGGCATCAAAATCATTTGGTGTACCCCACACAACTTTACAACGTTATGCAAGAAGCGAAAAGACCATTGAAGATATTTTTGCAAGTAAGCTTGGTCGGCCTCCAACATTAGGTGCCGATATGGAAAATGAACTTGTTAAATACATATTGGAAATGGAGTCACGATATTGGGGACTTACGCGGGCAGATATACGATCTTTATGTTTTCAAATTGCCACAATAAATAAAATACCCAACAAATTTTCTGTAATGAAAGAATGCGCAGGAAGATATTGGTTAAACGGTTTTATTAGACGTCATCGAAACGTAATAAGCTTAAGAAAGCCTACTGGAACCAGTGCAGATCGTGTTCGTGGTTTCTCTAGAGAAAATGTCGATCTATTTTTTAATTTACTTGAAGCTGAGTACAATAAGTACAATTTTCCACCTTCACGTATCTGGAACGTAGATGAAACCGGAATATCAGTGGTGCCATCACAGCAACCACAAATAATTGCTAGAAAAGGCAAAAAGCAGATTGGTACGATGACATCAGCCGAGCGTGGGTCACTGGTTACCGTCATTACTTGCATGAGTGCAGGAGGAGCGTTTGTACCTCCGTTTTTTATATTTCCTCGTAAAAATCACAACCCACTTCTTATGAAGGATGCTCCACCTGGCTCGAAGTCGGCATGCCATTTATCCGGATGGGTCCAAATTCCTATCTTTACGGAATGGTTCAAACACTTTTTAAAGGAAACAAAGCCATCTGCAACCGACCCAGTTTTACTCATTTTAGATGGACATTACAGCCACACGCGCAATATCGAAGTGCTGGACCTAGCTCGAGAAAATAATGTTACCATTATTTCACTGCCTCCTCATGCCACACATAAACTTCAACCATTAGACAGAACATTCATGGGTCCTTTGAAAAAATATTACAATGATGAAATAAGAAGGTATATAAGAGAGCAAGGAAGAAAACTGACACCTTTTGATATTACTGGCCTATTCAGTAAAGCGTACTTGAAGGTTCAGACTGGAGAAATAGCCGTAAATGGTTTTAGAGTTACAGGCATTTATCCTTTCAATAAAAACCTTTTCACCGATGCTGATTTCCCAGCAGAAAATGTATCAGAAGAGCCAGCAGAAACTACACACTCAACAACAGCAGAAACCTCAAATGACATATCTGGAAACCAGGAAAACGCGAGCACAAGTAGAAATCTCATTTCTCCCTGGGAGGTTTCTCCAATACCTAAGTTGCGGCAGCCAGCAACGAATCGTAAGGGCAGAAAAACAAAGGCTACTGTCCTTACAACTTCGCCATACAAAAATGATTTAATGCAGAGCATCGAAAACATTAATAAAAAACGTAAAATTCCCCTAAGTGAATCTGTTAAAAATGTGCCTAAAAATGTTAACAGAAAGAAACCTCGTGCTGATTCAGATTCAAGTGAGAGTGATGAAAACGTCAATTTGAACGACACATCAGATGAAGAGGAGTATTTAGGCGTTCCACCTACAGAAGACACCTTGTGCAATTATTGCGATAAGGCTTATAAAGATGATTTAAATATAAAGCCATGGATTTCATGTTTGCAATGCGAACAAGTTTGGGCTCATGAATTGCTGTTGCTGGTGTTTGGTGATGCTGTTGCTGCAGTTGTTGTTGCTGGTGTTGGCGATGCTGTTGCTGCAGTTGTTGTTGCTGGTGTTGACGGCTTGATGGCGACTTCGCTGCTTTTTTGTAACATTGGCACCACCTCAACCGTTGAGACATCAACAACAACGACAACAGCAACAACAACAACAAAAGCAGCATTAGCTAGTATAACTAAAGTTACAACAAAAACAAACAACTAA
- Protein Sequence
- MPKKGEIRNWEAGDMRRAIQAVRDGQMGILLASKSFGVPHTTLQRYARSEKTIEDIFASKLGRPPTLGADMENELVKYILEMESRYWGLTRADIRSLCFQIATINKIPNKFSVMKECAGRYWLNGFIRRHRNVISLRKPTGTSADRVRGFSRENVDLFFNLLEAEYNKYNFPPSRIWNVDETGISVVPSQQPQIIARKGKKQIGTMTSAERGSLVTVITCMSAGGAFVPPFFIFPRKNHNPLLMKDAPPGSKSACHLSGWVQIPIFTEWFKHFLKETKPSATDPVLLILDGHYSHTRNIEVLDLARENNVTIISLPPHATHKLQPLDRTFMGPLKKYYNDEIRRYIREQGRKLTPFDITGLFSKAYLKVQTGEIAVNGFRVTGIYPFNKNLFTDADFPAENVSEEPAETTHSTTAETSNDISGNQENASTSRNLISPWEVSPIPKLRQPATNRKGRKTKATVLTTSPYKNDLMQSIENINKKRKIPLSESVKNVPKNVNRKKPRADSDSSESDENVNLNDTSDEEEYLGVPPTEDTLCNYCDKAYKDDLNIKPWISCLQCEQVWAHELLLLVFGDAVAAVVVAGVGDAVAAVVVAGVDGLMATSLLFCNIGTTSTVETSTTTTTATTTTKAALASITKVTTKTNN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01175004;
- 90% Identity
- iTF_01175004;
- 80% Identity
- -