Pcor015029.1
Basic Information
- Insect
- Pherbina coryleti
- Gene Symbol
- retn
- Assembly
- GCA_943735905.1
- Location
- CALSEP010000473.1:394937-500501[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3.7e-26 2e-22 80.6 0.0 2 89 259 344 258 344 0.96 2 3 3 1.6e+04 -2.4 0.4 7 13 492 498 455 530 0.61 3 3 6.7 3.6e+04 -3.6 0.0 29 46 672 689 663 699 0.57
Sequence Information
- Coding Sequence
- ATGCTGCCAGATGATCGACTGAATAACTCACATGACGATCATTCGGATGACGAGATGCGCGAGTGCGATTCTATAGATGGTGATCATGTGATCGGCGGTAATAGTTTGGGTCGTGGTGCTGGTCGTTTGAACTCTTCGATGGCGAGCAGTGGCGGTGATATGAGCTTTACCGGTGCTGGCGGAGGTGGCAGTGGTGGAGTTCGAACTCCAGATCATCAGACTGAAATGCAGATGGGTCACCATCATCAATTCCCGCCAAATCATCCTCTAGGAGCACTCGGTAATTTTATGGGCATAGGTGGCCTACATGGTCTGCCAAATTTACAACAACACAACGATGTTTTGGAGAAACTCAAAATGCAAGTGCGTGATATGAAAGTTGGTCTGATGGAACAAGACTATGCTGCTGCTCATGCTGCCGCCTTCGGCAGCAATGTGCTACCAACACCTATAAATACTGCATTCTCGTTGCCACCCTCAACAATACCTAGCTTTGGACATTCACAAAATCTTGCTGCGGCAGCCAACAGTGTTGCCAATGGTGCTTTAAGCGGTCAAAATTCCAGTGTTTCGGCTACATCGTCAGCGTTGACAAATGGTAGCAGCTTCGCATTCACATCACCAACAGCGCCCAGCACAAAAGATGTTAATCCAGCTTCAAATTCTTCCACCTCCAGCGAGGCTTCCAATTCTTCACAACAAAACAACGGCTGGAGTTTTGAGGAGCAATACAAACAAGTGCGACAGCTCTACGAAATCAATGATGATCCTAAGCGCAAAGAGTTTCTGGATGATTTGTTCTCATTTATGCAAAAACGAGGCACACCCATCAACCGCCTGCCCATAATGGCCAAATCCGTACTGGATCTGTACGAGCTCTACAATCTGGTAATTGCACGTGGCGGTTTAGTTGATGTAATTAACAAAAAACTATGGCAGGAGATCATTAAAGGACTGCATTTACCCTCGAGCATAACCAGTGCGGCTTTTACACTGCGAACACAATACATGAAATATCTCTATCCGTATGAGTGCGAGAAGAAAAACCTTAGCTCACCTGCTGAATTACAGGCAGCCATTGATGGCAATCGGCGTGAAGGACGACGTTCCAGCTATGGACAATTCGAAGCGATGCACAATCAACTGCAGATTCCACAATCGATGCGTCAGTCGCTGCCCGGTGCCATGCAACAAATGTCACCGTTGGCTTTGGTAACACATGCGGCAGCTCAAAATGGTCCCACGGCACAGTCGGCAGTTGCTGCTGCCGTTGCCCATCACAGACTGATGGGGCCAACATTTACGCAAGTACCAAATCTGATGGCGCACGAAATCGAGCAACGCATGATGGAATATTTGAAAATAATACAAGGTGGCAAGAAAGAACCGACGCCCACGCAAATGCAGCAACATCAGCACCAACACCAGCAACAGCAACAGCAGCAGCAGCATCAGCAGCAACAACAGCATCAACAGCAACAACAACAGCAACATCAGCAGCGGCAGCGCTCACAAAGTCCTGAGATAACTACGCGCGAGGCTTTGAACGCACTGGAAATGTCGCGTGTGGCCTTGTGGCAAATGTATCACAACAACACGAGTCCACCGTCATCGGTGAATACCTCACCACAGGGCGTTGCAGTGGGTGGTGCTGGTGTTGTCAATGGCGTTGAACCGCAGCGCAGCGAAGCCCTCAACCTTTCGGAGTCACCTTCTCCGAGTCTCACCACCATAAAACGTGAGCGCGAACGTGAACCCTCGCCGGAGCAAGTAGACCGCGACGATTTTCACCACTTGCCACCACCAGCTAAGCGTGGCATTGCAAGCGGTAGCGGCGGCATTGTGCCGAATTTTTATCTGCCACCCGGCATGACGAATGTCAATTTCCAACATAGCATGCAACATGATTCCGATGGTGAACATGAAGCTGAAGAAGATGATGTGGACGAGGAGGAGGGTACATCGGGCGATCACAATACGACGGCAAACTCCTCGACCGACGAAAATGAGCGTCGTCATGTGAATGGCCATCATCTTCATCAGCATCATCTGCAGCAACAGGCGTATCAGCATCTTCATCATCATCACAGCAATCATCATAACGATAAGTCTGACGATTCCGCCATTGAGAGTTCACCAACAACATCCGCTTCAGCTGGCAATGGCCACATCTCACCAATATCAACTAAAAAAATTCACCTTAGCAAGCAGCAGCAGCAGCGTGGCGGCAGTGGCACTGAAGTGAATGCCACACATGGGTCGTCCAATGTGAGCATAAGTCCCTTGGAACAGTTGAGTCTGCTATCGGGTATGCAGTTCCGCGTGTCACGCAATGAAACTGGCGCCAATGGTGAACAACAGCTCATTGTTAATCTGGAATTGAACGGAATCAAATATTCCGGGGTGCTCATCGCTAATGAAGCACCTGCGGTCGGAAAACAGGAACAAAAATTGGAACCAAGTACTGCGGCAGCCATAACGCCGCGTTCAAATGTGGGCCCCACGGCAGCAGAGGTTGCAAAAAACACAGCCACAAGCACAACCACAACATTAACAAATCCAACAACTACAACAACAACAACAACTACAGTTGATGATCCCGAAGCAGCAACAGCGACAGCAACAACAAGCAGCTCATTGAAGCTGACAAATGGACCCAGCAGCGTATTGAAGGAGTCGCTGATGGCCTCGTAA
- Protein Sequence
- MLPDDRLNNSHDDHSDDEMRECDSIDGDHVIGGNSLGRGAGRLNSSMASSGGDMSFTGAGGGGSGGVRTPDHQTEMQMGHHHQFPPNHPLGALGNFMGIGGLHGLPNLQQHNDVLEKLKMQVRDMKVGLMEQDYAAAHAAAFGSNVLPTPINTAFSLPPSTIPSFGHSQNLAAAANSVANGALSGQNSSVSATSSALTNGSSFAFTSPTAPSTKDVNPASNSSTSSEASNSSQQNNGWSFEEQYKQVRQLYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSSPAELQAAIDGNRREGRRSSYGQFEAMHNQLQIPQSMRQSLPGAMQQMSPLALVTHAAAQNGPTAQSAVAAAVAHHRLMGPTFTQVPNLMAHEIEQRMMEYLKIIQGGKKEPTPTQMQQHQHQHQQQQQQQQHQQQQQHQQQQQQQHQQRQRSQSPEITTREALNALEMSRVALWQMYHNNTSPPSSVNTSPQGVAVGGAGVVNGVEPQRSEALNLSESPSPSLTTIKREREREPSPEQVDRDDFHHLPPPAKRGIASGSGGIVPNFYLPPGMTNVNFQHSMQHDSDGEHEAEEDDVDEEEGTSGDHNTTANSSTDENERRHVNGHHLHQHHLQQQAYQHLHHHHSNHHNDKSDDSAIESSPTTSASAGNGHISPISTKKIHLSKQQQQRGGSGTEVNATHGSSNVSISPLEQLSLLSGMQFRVSRNETGANGEQQLIVNLELNGIKYSGVLIANEAPAVGKQEQKLEPSTAAAITPRSNVGPTAAEVAKNTATSTTTTLTNPTTTTTTTTTVDDPEAATATATTSSSLKLTNGPSSVLKESLMAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -