Ptre010351.1
Basic Information
- Insect
- Pheosia tremula
- Gene Symbol
- -
- Assembly
- GCA_905333125.1
- Location
- HG995427.1:2361424-2369727[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.03 1.8 9.3 2.2 1 19 561 579 561 582 0.94 2 13 6.3 3.8e+02 2.0 0.8 2 23 594 616 593 616 0.93 3 13 0.1 6.2 7.6 0.6 2 21 654 673 653 674 0.90 4 13 8.3 4.9e+02 1.6 0.7 1 12 679 690 679 701 0.75 5 13 0.18 11 6.9 1.0 1 19 916 934 916 935 0.84 6 13 0.06 3.6 8.4 0.2 2 23 944 965 943 965 0.97 7 13 0.58 35 5.3 3.9 3 23 1067 1087 1066 1087 0.93 8 13 0.38 23 5.8 2.0 2 23 1103 1124 1102 1124 0.95 9 13 2e-07 1.2e-05 25.6 1.4 1 23 1130 1152 1130 1152 0.98 10 13 0.00094 0.056 14.0 0.7 2 23 1158 1179 1157 1179 0.96 11 13 8.5e-06 0.00051 20.5 2.0 2 23 1186 1208 1185 1208 0.97 12 13 0.4 24 5.8 4.4 1 19 1216 1234 1216 1235 0.86 13 13 0.00086 0.052 14.2 0.9 3 19 1248 1264 1247 1266 0.97
Sequence Information
- Coding Sequence
- ATGTCCGCGAATGGTAAAAAGAAACCTCGTAAAACGAAGTTAGTGCCTCGGATGTATACGGAAAATGATAACGAAAATAACACAGATAAGCAGATGTCTGCAATTAAAATCATAGAAGTGAAGACTGTGGCTGCAGAGTCCTTTGAGACTCCACCAACAGTTGCACAATACAAGATATACAAGATGTCAGCAAACAAAGTCCCGCAACTCAAGAATCCCCAAACAAACGCCTCACAATCAGAGACCCCTGCCACCAATGTTTCAAAACTGGACATTCCACCGGCCAAAGCATCTAGATTGAAGACTACGGTCTCTGAAGTCTCACAATTCATGGCTGCACAAGCCAAATTCGAGCCTACACACTCCAGAGTCTCTCTATTAAAGACTTCGGCAGCCAAAGTCTCACAGTTGAAGGCACCACAAAGGAGAGCCTCACAAGCCAATACCCGGGTAGCTGTAGGCTCACAAATAAAGGCTTCACAATCCAATATGTCTCTATTAAAGACTTCAGCAACCAATATCTCCCAGGTTACACCTCCAACACCCAAAGTATCACAAGTCAAGCCTGGGCAAAGCAATATCTCACAATCCGGAACACCAGCAACTATAGCCTTACAATCAGCTACTCCACAACCCACGGTCTCACAGTTTGAGATTTCCGATGACCAAAAGTCTCATATACCATTCCGTATCTCTGTGAATGTGGAGGTGGAAGAGTTTGAGGATGAGGACCGCTTACAGATCGACGAAAGCGCTTTCGAGAATCAAGAAATTAAAATGGAGATTGATGATGAAGATAAAATTGATACACAAATCCAAAAGGACACTGAGAGCAGCAGTGTGAGAGTTTCAGAGCAACCCGATGACCCTATAATCTTTCAGAATATAGTTATTAAAAATGAAAGAATATCTCCAGCAAGAGATATGGAAATAGTTAATAGCACAGATGTTCACGCAGACTTACAAGCAAACGTAACAATTAAAATTGAAACTAAAGATAGTGAAACTACAAACCAATCTACTGATAATAATGTAAATTCAAACCTAATCACACAGAACAATGTAAATTCAGCCCAAGTCACCAGCAATAATGTAAATTCAATTCAAATCACAAACAATGATATAAATTTGAACCAAATAAGTGACAGTAATGTTAGTTCAAACCAATTATCTGATCCCCAAGTACCGCATGACCCAAATACTGCACTAAACCAATATTTGCTTACTGAAACACAAATTCTGGAAGCCTCAGAGAAAATACTAGCGACTTCATCGAACATAGCCGATAAAATATTAGCTATCGAAGCTAGAAATATCATTGGACGTATAGCCAAAGAGAAAACGGTAGAGAGTAATTTAATTGAAAATAAAATTCAGTACGCACTAGACGATTGGAAGAATTGGACAGCGGGTAGTCGGAGACCCTCCCCTTTGCTCTACAAATGTTATATATGCTTACAATCGTGGTGGTACCTATCGGAGTATAAAGAACACCTTTTACAACACACCGAGAGCAATATAAAAGTTTCAGTCGAAGAAACATCCGTCGAGGAGTGTAACATTATATCATACATCGATATGGTGCCTGAAATATTGGACGTGGAACCAACCGGAATATGTTGGAGGTGTGAGAAGGACTACAGTGTCCACAAATTGAGTAATAGACAATCCGAATGCTATTACAATTGTAAAAAGTGCCAAAAACAATTCTATTCGTGTACAGGGCTCAGGGAACACGAGGACATTAATCCGGCCTGCTCAACGTCAACGGGAACGCTAAAATGTTTTCTATGTCCAAATATGTCGACCACTATCATAGAACGAAGGAAGCATATGCAGTTAAAACATTCAGTACGCACCGACTTACCAATACCAACCTCGTATAAGTGTTGCAACGATTGCGGATCAAAGTACTTCATATACAACATGCACAACTGTAGAAACAAAATATGTGGCAGTCAATGCAATTACTGCTACAGAAAGTTCACGCACAGACTGTTGGCAGAATTGCACATGTCAATCGACAATTCTGGGTATAAATGTAAGATTTGCACGTTAGTATTGCCCAAGAAGTGTATGGAGTTGGAGCACGTGTTGATGCATTCCACTACATTCATATTTCCATATAAATGTATTACGTGTGCTGATTTCTATGTGTACTTGGATGAGAATGTGAGTGTGCAACATCGCTACATAAAACACAAGCAGAAGTTTGATAAAAAGAAGAATTATTTTGATAAGGTGCTGGTACCTATTTCATGTATTCTTCCAAATTACGAGAGTCCCGACAATGATCTACAGCAATTAGCTGAAGATACTATTAATGTACAACAGAACATACCGGAGCTTTCGTTGATACCAGAAATCAAATTAGAAGTCATCGACGATGATGAAGTTCAAATCAAACAAGAGCCGGTCGAAGAACTGGTTATCAAAGAAGAGAAACTCTCCGATGAGGAATACGAAGATGATATGATACGACTCAACTATGAGCACGCATTCGTACACTCAAACAACAAGGTGAGAAGGAAACGCAAAATTTACACTTGCCGAAAGTGTCCGTTTGAAGGGACACACAAGCGCTACAAAAGACATCTGATCACTAAATGCGGTAGAACCAGCATCGTTATGAGCGAGCCCCGAGTGTACGCTTGCACCAAATGCAATTTCCAAGGCCACCACTCCGTATACAAGGAGCATTTGAAGACTGACTGCTCTAAGCACACGTACCTCAACGAGTCTGTGTACACATGCACCAAATGTGACACAACGTTCGAGTCCATCAAACGATACTTAGCCCATTTCGTGTGTCACAAATATAAGTTTCAACAGTGCCCGGTGTGCATGAACACGTTTGGAAGTTTTTCAACGTTGATCATACACTTGAACAGTCACATAAGACAGAATTATCTTAAAATGTACTCGATACAGAGCAACGATGATGCTGCACAACGGAGCAATCAAGTTAGTAAGTGCAAGAAGTGTTACCAGGAGGTGACGGTCGAAGACAGATTTGTGCATTGGGAAAGACATTTAATGCTGAACTCGAGTGTGAGTAACGCTGGTGATGGAAAAGGACCTGTCGTGGTTGATGATGATGATGACAACGATGGTGACAATTATTCAGGATTGAAGCCGGAGATGTTGGAAGTGTTAATTGAAAGCCTTCAGTCCGAGCTGAGACAGCGAATCCGTGACTGCCCCCAATGCTTCCGCACGTTCAACCGCAACAACGATTGCAAACGCCATTTCATCGAGCATTTCCTCAGCGACGCATACTCGAAATGGCACAAATATGGCTGTTTGAAATGTCAAATATGCGGGGACGAGCACAGGAAGCCGGATAAATACAAGCGACACATGAGAGACCACGGCTGCCTGCCGATATTTCAGTGCGAAGTGTGTGACAAAGCGTTCAGTGACTCGAGTAATTTTACCAAACATAAAAAAGTGCATAACATGAAAGTGTTGATATGTGATTTGTGCAAAAAGAAGTTTCAAGCTAAGAATTCGCTTATAAAACATATGGAGATGCACAAACTATCGAAGCCAGTGTCCTGTCACATATGCGACAAGGACTTCCCCACAGACTCGTTGTACCGCCGACACATGCGAACACGCCACGACAACTCGCTAAAACGCAACTACAAGTGTCACATATGCAAGGAAACATTCTACACGTGCAAAGAGAAATGGGAACACTCGTGGGAGGTCCACAAGGAGAGGAAGTTTAATGCAGATTGCAATGTCTGCGGTAAATCGTTCCGAACGCATCTCGCGTTGAAGAGACACGACAGGTCGAACATGTGCAGGCCCAACGCCCCCAACGTTGTTCTGAAAACGACTCCGAAAACTTTTCGCTTTGATAACAGCATTGTTTTGTGGTATGGCGACAAGAAATAA
- Protein Sequence
- MSANGKKKPRKTKLVPRMYTENDNENNTDKQMSAIKIIEVKTVAAESFETPPTVAQYKIYKMSANKVPQLKNPQTNASQSETPATNVSKLDIPPAKASRLKTTVSEVSQFMAAQAKFEPTHSRVSLLKTSAAKVSQLKAPQRRASQANTRVAVGSQIKASQSNMSLLKTSATNISQVTPPTPKVSQVKPGQSNISQSGTPATIALQSATPQPTVSQFEISDDQKSHIPFRISVNVEVEEFEDEDRLQIDESAFENQEIKMEIDDEDKIDTQIQKDTESSSVRVSEQPDDPIIFQNIVIKNERISPARDMEIVNSTDVHADLQANVTIKIETKDSETTNQSTDNNVNSNLITQNNVNSAQVTSNNVNSIQITNNDINLNQISDSNVSSNQLSDPQVPHDPNTALNQYLLTETQILEASEKILATSSNIADKILAIEARNIIGRIAKEKTVESNLIENKIQYALDDWKNWTAGSRRPSPLLYKCYICLQSWWYLSEYKEHLLQHTESNIKVSVEETSVEECNIISYIDMVPEILDVEPTGICWRCEKDYSVHKLSNRQSECYYNCKKCQKQFYSCTGLREHEDINPACSTSTGTLKCFLCPNMSTTIIERRKHMQLKHSVRTDLPIPTSYKCCNDCGSKYFIYNMHNCRNKICGSQCNYCYRKFTHRLLAELHMSIDNSGYKCKICTLVLPKKCMELEHVLMHSTTFIFPYKCITCADFYVYLDENVSVQHRYIKHKQKFDKKKNYFDKVLVPISCILPNYESPDNDLQQLAEDTINVQQNIPELSLIPEIKLEVIDDDEVQIKQEPVEELVIKEEKLSDEEYEDDMIRLNYEHAFVHSNNKVRRKRKIYTCRKCPFEGTHKRYKRHLITKCGRTSIVMSEPRVYACTKCNFQGHHSVYKEHLKTDCSKHTYLNESVYTCTKCDTTFESIKRYLAHFVCHKYKFQQCPVCMNTFGSFSTLIIHLNSHIRQNYLKMYSIQSNDDAAQRSNQVSKCKKCYQEVTVEDRFVHWERHLMLNSSVSNAGDGKGPVVVDDDDDNDGDNYSGLKPEMLEVLIESLQSELRQRIRDCPQCFRTFNRNNDCKRHFIEHFLSDAYSKWHKYGCLKCQICGDEHRKPDKYKRHMRDHGCLPIFQCEVCDKAFSDSSNFTKHKKVHNMKVLICDLCKKKFQAKNSLIKHMEMHKLSKPVSCHICDKDFPTDSLYRRHMRTRHDNSLKRNYKCHICKETFYTCKEKWEHSWEVHKERKFNADCNVCGKSFRTHLALKRHDRSNMCRPNAPNVVLKTTPKTFRFDNSIVLWYGDKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01179961;
- 90% Identity
- iTF_01179961;
- 80% Identity
- -