Ptre017802.1
Basic Information
- Insect
- Pheosia tremula
- Gene Symbol
- -
- Assembly
- GCA_905333125.1
- Location
- HG995421.1:6034333-6043838[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 6.3e-05 0.0038 17.7 1.1 1 23 291 314 291 314 0.96 2 10 0.89 53 4.7 5.5 2 23 322 343 321 343 0.96 3 10 0.00092 0.055 14.1 6.2 2 23 375 396 375 396 0.98 4 10 0.009 0.54 11.0 0.1 1 23 400 423 400 423 0.95 5 10 8.5 5.1e+02 1.6 0.1 5 15 464 474 463 476 0.85 6 10 0.051 3 8.6 0.3 2 20 529 547 529 549 0.93 7 10 0.17 10 6.9 5.9 3 23 587 608 585 608 0.91 8 10 1.7 99 3.8 0.1 1 23 620 641 620 643 0.87 9 10 3e-05 0.0018 18.7 0.9 1 23 647 669 647 669 0.98 10 10 0.00012 0.0069 16.9 1.8 3 23 677 698 676 698 0.97
Sequence Information
- Coding Sequence
- ATGTCCAACCTCAAAATATGTCGGATTTGTTTGAATACAGACGTGAAAATGTACAACTACCATAAGTATCAACTTAAAAAATATTATGATAATGTTATGGCTTTAAAGACATTAGAAGGAGATGGTATGCCTCATCACTTCTGTTATGAATGTGCTGCCATGCTACACAAGTATCACAAGTTCAAGGAGAAATGTAACCGTGGGCAGGACATACTCAAAGAAATACTGAGGAAGGGACCCATCACATTACAATCAATATCAAACGTAGACAGAAAAGCAAGAGACCTACAATCAAGTGTTGAAATCATAACCGTTAGACAGGACCGAGTGAAAACATGCTTTGTTAAATCTCACATAGAAAAAAAGCCCCAACGTTTAAAAATAGAAAACGTAGATATCACTTCGCTAACCAATGATTATGAGTCCTTCGAATTTGCCACTAAAGATGTTCATAACGTTGAAGATGCAGATAGTAAGCATGAACATAGAATTTTAATAGACGATGTGCCAGACAAAGACCACAAGAGTATAGAAGAAGATACAAATCAAATAGGAGAGTGTGTTAATGATGTTGACGTCACAGAAGTAACAGAAGCTTTTGAAAGCGACGATGAGAAGTTGTTGATCGATTTTAAAGTGGATTCGAAAGAGGTCAAAAGTAAAGGAAGAAGGAAAAAGAGGGATAAAAGCACAGGTAACAAAAAGAAAAAAAAGGCTGCAACTGAGGAAAAGACAAAAAGGTTCGAAGTTTCGGATAAAAAGAAAACTGATTTGGATCCCAATAATTGGTTGAAATTCAATCTGAGCGAGGAGGAGGCGGTGCAGGAGTTCAAAGCGAGAGGACAACACAAGAGATACTTGTCGGCTGAGTTCAAATGTACGGATTGCTTAAGAGGTTTCTCTAAAGCAGATATGCTGAAAAGACATGTCAAATTGAGGCATGATGACTCTGTAGGTCCTATTGAATGCCGTTTCTGCCGTATGCGGTTTAAATGGAAGTGCTTCCTGAACAAACACATGAGACAGCACTACACAAAGTACAAGTGCTTAAGGTGTGATCTCGTCTGTCCGCTAGAAACGACTGCACTGTTCCATGAGGAGTACCACAATGGCGTCACAAGAAAGTGTAAACACTGCGGTGAAGAGTTCAAGCATCTGACGACGTACTACACGCACCTTCGCACGCACCGCAGCGAGCATGTGTGCACGCTGTGCGGCGCCTCCTTCGTCAGCGCTATCGGCCTCGGCATACACAAGAAGATCAAACACGTCGATCCTGCTAACGTTCATTTCGACGACCTGCACAGGTTCATTTCGACGACCTGCACAGGTTCATTTCGACGACCTGCACAGGTTCATTTCGACGACCTGCACAGGTTCATTTCGACGACCTGCACTCGTTCATTTCGACGACCTGCACAGGTTCATTTCGACGACCTGCACAGGTTCATTTCGACGACCTGCACAGGTTCATTTCGACGACCTGCACAGGTTCATTTCGACGACCTGCACTCGTTCATTTCGACGCCCTGCACAGGTTCATTTCGACGACCTGCACAGGAGATACGTCAGGGTGAGGATGAGTACTGTGAGAGATGTGACATCAGGTTCGAGACGAGGAAAGCGTTTGAGGAACATTTGATACACTCGGCGAAGCACGTGGATGGGTTCGATGACTTAGAAGTGCAATTGTCAAGACCATCAAATTCTAGGAAACGGAGGCAAACTTTAAAAAGGCATACGCGAATACCCACCGATTGTCACCTTTGTGGCAAACACTTTGCAACGCAAGCCGCGTGCAGGAAACACCATCTGGCGGAACATCCGCGCACTTCGTTCTTCGCGCCCAACGAGCGGCACATTTGTGAAGTTTGCGGGATATCGTTAGCTCCGGGCAGCGTGACGAGTCACCTGAACATCCACACGAGGGAGAAGCTGTACTCGTGCAAGACCTGCGGCCGACAGTTCAACAGCAAAGGCGGCATGATCACACACCAGCTGACGCACACCAGTGAGAAGCCGGTGGCGTGCACGCTGTGCGACAAGCGCTTCAAGCAGATCAGCAGCATGAAGCTCCACTACCGCACCTTCCATCTCAAGGAGCCCTATCCTAAGAGGAATAGAAAAAAGAAATCGGATGATATATCGAAGCTGGACGACTATATTCACGAAGAATCGGACGAGAACATGCCGCTCGATAGATGGCGCTGA
- Protein Sequence
- MSNLKICRICLNTDVKMYNYHKYQLKKYYDNVMALKTLEGDGMPHHFCYECAAMLHKYHKFKEKCNRGQDILKEILRKGPITLQSISNVDRKARDLQSSVEIITVRQDRVKTCFVKSHIEKKPQRLKIENVDITSLTNDYESFEFATKDVHNVEDADSKHEHRILIDDVPDKDHKSIEEDTNQIGECVNDVDVTEVTEAFESDDEKLLIDFKVDSKEVKSKGRRKKRDKSTGNKKKKKAATEEKTKRFEVSDKKKTDLDPNNWLKFNLSEEEAVQEFKARGQHKRYLSAEFKCTDCLRGFSKADMLKRHVKLRHDDSVGPIECRFCRMRFKWKCFLNKHMRQHYTKYKCLRCDLVCPLETTALFHEEYHNGVTRKCKHCGEEFKHLTTYYTHLRTHRSEHVCTLCGASFVSAIGLGIHKKIKHVDPANVHFDDLHRFISTTCTGSFRRPAQVHFDDLHRFISTTCTRSFRRPAQVHFDDLHRFISTTCTGSFRRPAQVHFDDLHSFISTPCTGSFRRPAQEIRQGEDEYCERCDIRFETRKAFEEHLIHSAKHVDGFDDLEVQLSRPSNSRKRRQTLKRHTRIPTDCHLCGKHFATQAACRKHHLAEHPRTSFFAPNERHICEVCGISLAPGSVTSHLNIHTREKLYSCKTCGRQFNSKGGMITHQLTHTSEKPVACTLCDKRFKQISSMKLHYRTFHLKEPYPKRNRKKKSDDISKLDDYIHEESDENMPLDRWR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01179868;
- 90% Identity
- -
- 80% Identity
- -