Ptre016913.1
Basic Information
- Insect
- Pheosia tremula
- Gene Symbol
- -
- Assembly
- GCA_905333125.1
- Location
- HG995408.1:1758299-1764715[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.13 7.7 7.3 4.9 1 23 286 308 286 308 0.98 2 12 0.0026 0.15 12.7 3.4 1 20 315 334 315 335 0.95 3 12 1.4 85 4.0 3.7 1 23 342 364 342 364 0.97 4 12 0.0064 0.38 11.4 1.5 1 23 368 391 368 391 0.97 5 12 0.035 2.1 9.1 0.1 3 23 400 421 398 421 0.95 6 12 7.7 4.6e+02 1.7 0.0 2 20 432 450 432 452 0.90 7 12 6.3e-07 3.8e-05 24.0 2.0 3 23 462 482 462 482 0.99 8 12 0.00029 0.017 15.6 0.5 2 23 501 523 500 523 0.96 9 12 0.00051 0.031 14.9 0.6 1 23 543 565 543 565 0.98 10 12 0.0002 0.012 16.2 0.1 1 23 571 593 571 593 0.96 11 12 3e-05 0.0018 18.7 2.8 2 23 600 622 599 622 0.93 12 12 0.026 1.6 9.5 7.7 1 23 628 651 628 651 0.96
Sequence Information
- Coding Sequence
- ATGGAGGAGCTGTTAAATTATTGTAGGGTTTGTTTCGTGACAGATGTGAAGATGTTCAAACTAACAGACGTTATCGGTGAAATTTATGCAAGTTTACTCGAAATTCAGATGTATGATACAGATGAGCATCAGTATGCATGTTTTGAATGTGCAAGAATGCTGTTCAAATACAATAGATTTAAATCTAAATGTCTTCACGCACATAATATACTTTTAAAAATGGAATGTAATGGAAAAAAGGTATCCAAGCAAGTGTTAAATAATATTAAAATAGAAACAAATAAATATGAATTCAATTTAATGTGTAGTCCTATAGTTGTGGAAAGTTTTGATCCAATTAATGACAATTATACATTTGACACACTCGAAAAAAAAGAAGCAGATGAAATAATAATTAAGCCAGAAACACTTGAAATTGAACATGACACATGTGAGAATATTATTCCAAATGGTATCCAAGATGAAGATGAATTTGAAGAAATTCCATTGAATATGCTTAAATCTAAATCAACTGATGTAACAATTACTAATAGAGAAATACAGAATAACATAAATAGTACAAATTCTAAAAATAATATACATTTATTAGAAACTGTTAAACATAACAATGAAAATACAAAAAATTTGGATAACCCTCTAAAAGTATTGAAAAAGAAATCAGTTAGACAGTCTAGTATTACAAAGCGCAAGCAAACTGTAGATGCGTCTGATGTTTCACTGAAGAAGCGAAAGACTACAAGGTACGAGGGAGTCCTGGAGTCCACAGAGGACTTCACGGTGATCTGGTTGACACCAGACGATGCTAAAAAAGATCTTCTGCTTAGAAAAGAAACGGAAAATTATAAAAAGTCACCACACAAATGTGACTTTTGTTTTAAAGGATATGAATTTCTTAAGCCATTCCAGAATCATATGAAGAAACACAGTGAGACGTTCAGTGAACACAAATGTGATTTCTGTCATATTAGATTTACTAAAAAGTACCTTTTGCGAAACCACGTGCTGTGCTGCCATGAACGAAGATTCCATTGCACTCACTGCTCCTATGTGTCATATTATCCCCAACAAGCGCAGGATCACGCCAAATCTCACAAATCAAAGTTTTCATGCAAAGTTTGTGGAAAATTATATGGTGCACGGCACTCGTTGATCAGCCACACGAAGATGCAACACCCGGAGTTTGTCGCGGAGACCATCTGTGAGTTGTGTGGTAACATATTCTTCTCGGCGGCGGGATTGATCATGCACAAAAAGAGGGTCCACCAACAGGAGATGAACGATAAACGTGGTCCCGAATGCAAAGCGTGCGATGTACATTTCGCCTCGGACGCCGCATGGAAGCTGCATCTAGTGCTGTCCTCCAAACACGAAACAATTAATGGTTGTAAAGTCTGTGGCGAGAGATTCTCAACTGCTGATCATCTGAAGGAGCACATGAAGACACACGAAGGCAGACGGAAACGGGACTACGTTCGTATGAATGCAAACCTACAGAACGTGACCTGTAGAGAGTGTGGGGAACAGTTCAGCAGGCTTCGTATGTACCGAACGCACGTGAATACGGCGCATCCCGACCAAGCGAGTGCTCTACTGAACTGCGAAGAAGCGCACACACCTACGAACAACTACGTCTGTGAAGTTTGCGGGCGGATGTTCGATAAAATATCGACCCTGGGGTACCACTTCCGTAAGCACACGGGCGAGCGGCCGTTCAAGTGCCCGGAGTGCGGCAAGGGCTTCCTGTCGAAGGTGCAGCTGGTCGCGCACGCCACCGTGCACACCAAGCGCGACACCTGCGAGTGCGACACGTGCGGGAAACTGTTCTCCAATAAGAGCGGACTCAGGAAACACTATAAAGCCACCCATTTGAACCAGCGTCCACACAAATGTCTCATATGCGATAAGCGTTTCGTGCATATGTGCGACATGAAGACACACATTAAGTACTATCACGAGAAAGTGCCATATCCGAAAAAGAAAACAGCAACTACGCAGCAATGA
- Protein Sequence
- MEELLNYCRVCFVTDVKMFKLTDVIGEIYASLLEIQMYDTDEHQYACFECARMLFKYNRFKSKCLHAHNILLKMECNGKKVSKQVLNNIKIETNKYEFNLMCSPIVVESFDPINDNYTFDTLEKKEADEIIIKPETLEIEHDTCENIIPNGIQDEDEFEEIPLNMLKSKSTDVTITNREIQNNINSTNSKNNIHLLETVKHNNENTKNLDNPLKVLKKKSVRQSSITKRKQTVDASDVSLKKRKTTRYEGVLESTEDFTVIWLTPDDAKKDLLLRKETENYKKSPHKCDFCFKGYEFLKPFQNHMKKHSETFSEHKCDFCHIRFTKKYLLRNHVLCCHERRFHCTHCSYVSYYPQQAQDHAKSHKSKFSCKVCGKLYGARHSLISHTKMQHPEFVAETICELCGNIFFSAAGLIMHKKRVHQQEMNDKRGPECKACDVHFASDAAWKLHLVLSSKHETINGCKVCGERFSTADHLKEHMKTHEGRRKRDYVRMNANLQNVTCRECGEQFSRLRMYRTHVNTAHPDQASALLNCEEAHTPTNNYVCEVCGRMFDKISTLGYHFRKHTGERPFKCPECGKGFLSKVQLVAHATVHTKRDTCECDTCGKLFSNKSGLRKHYKATHLNQRPHKCLICDKRFVHMCDMKTHIKYYHEKVPYPKKKTATTQQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01179738;
- 90% Identity
- iTF_01179738;
- 80% Identity
- -