Basic Information

Insect: Pheosia tremula
Gene Symbol: -
Assembly: GCA_905333125.1
Location: HG995411.1:8315058-8323604[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.002 0.12 13.0 3.1 1 23 371 393 371 393 0.98

2 12 0.19 11 6.8 0.2 2 23 401 423 400 423 0.94

3 12 0.023 1.3 9.7 0.5 1 23 427 449 427 449 0.94

4 12 0.012 0.74 10.5 0.7 1 23 454 477 454 477 0.98

5 12 0.0025 0.15 12.7 0.1 1 23 481 504 481 504 0.94

6 12 0.00084 0.05 14.2 0.1 1 22 517 538 517 542 0.93

7 12 0.00025 0.015 15.8 0.1 2 23 560 582 560 582 0.95

8 12 1.3 80 4.1 0.6 2 23 601 623 600 623 0.90

9 12 1.9e-05 0.0011 19.4 1.2 2 23 637 658 637 658 0.97

10 12 0.91 54 4.6 0.2 2 23 664 685 663 685 0.90

11 12 4.3e-05 0.0026 18.3 3.9 1 23 691 713 691 713 0.97

12 12 7.1e-06 0.00042 20.7 1.4 1 23 719 742 719 742 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.002	0.12	13.0	3.1	1	23	371	393	371	393	0.98
2	12	0.19	11	6.8	0.2	2	23	401	423	400	423	0.94
3	12	0.023	1.3	9.7	0.5	1	23	427	449	427	449	0.94
4	12	0.012	0.74	10.5	0.7	1	23	454	477	454	477	0.98
5	12	0.0025	0.15	12.7	0.1	1	23	481	504	481	504	0.94
6	12	0.00084	0.05	14.2	0.1	1	22	517	538	517	542	0.93
7	12	0.00025	0.015	15.8	0.1	2	23	560	582	560	582	0.95
8	12	1.3	80	4.1	0.6	2	23	601	623	600	623	0.90
9	12	1.9e-05	0.0011	19.4	1.2	2	23	637	658	637	658	0.97
10	12	0.91	54	4.6	0.2	2	23	664	685	663	685	0.90
11	12	4.3e-05	0.0026	18.3	3.9	1	23	691	713	691	713	0.97
12	12	7.1e-06	0.00042	20.7	1.4	1	23	719	742	719	742	0.98

Sequence Information

Coding Sequence: ATGGTGTGTTACTGTTGTGTAAAAGGTTGCAGTAATAGTAGCAACAGTAAGAAGAAGGATCCCAACTCTATGACATCGTTTCATGCGTTTCCCACGAACCCAGAATTAAAGACCAAATGGCTAAGATCAATAGGCCGGCCGTCCTGGGCGCCGCCGACTTACGCTCGTATTTGCAGTGCACACTTTAACTTTGACCAGATAAATTATGACGGCCGTCGCATACGCATCAAGGAAGACGCGATTCCTGTTAATGATTTACCACTAAATTCAAATTTCGAGGCATCTAGTGTGGAGGTGTGTAGAATATGCTTGGCTACAGATCTTAGGATGTACAGCCTGCAGGATAGCCAGTTGGGCACTTACATAGACTCCATTGTTGGAATTAGTGAGACTCATAACATAGAAGGTCTACCACAGTTTGTGTGCTACCAATGTGCAGCACATTTAATAAAATGCTATAAATTAGTTGAGAAGAGTATGATCACTCAAGCAACTCTGCTGGATATTTTTGCTCAAAATGGATATATAACAAAAAGCCTCATAAAAGAACAAGATAGACTCAAACTAAATCTAAAATCACAATTAAGTTGTTTCAAAACAACAAATCACATACATATTCAATATGATGAAGATAATACCACATCTTATTTTAACAAAACCGACTTAATTAATGATAATGAGATTTATTTAAAAATTGAAAAGGACTTGGTGTACAATGACACTGAATTACAAACGGAATTAGGTAAAATTGATAAAGGAGAAAGCAAAATTAACATTACTTATGAAGAAAATAAGCTCATAAGTGTAGAGAAAAGTAATCATAACAATTTTAATTTAGAAGATTGTACAATAAATAGTCCAATACAAGATACCAAGTCAGATGATGATAGTGAATCTGATGAAAATGTAAAACTAAATGTACTAAGAAGCAAAATTGAAATAAGAAGATTGAAACTTATCAGATCAAATGTAAAAAAGAAGAGGGATAAAGGATTAACACCGAATGAAACAGATATGAAAGAATACTTTGATATTGTGCAATTATCGCAACAAGAACAAATAGAGGAATGGAAAAGGACGAAGCGAAGGCCACTGACGAGCGAGACCGTATATGAGTGTGAGACTTGCTTCAAAACATTCGCGCACATAACCTCTTATCGCTCTCACATCACTAGTCACGACCCAGATCGAGGTAAATCGGAATGTGCCATCTGTAAATTACGTTTTAAAAGTGACGTTCTGGTGAGGTCTCATGCAAACCGTGCCCACGCAAAGAAATTCTATTGCAAATCCTGCCCCAAGGTGTTCAATAATGTTGGCGTTGCAAAGAAGCATCGACTCTGGCACGTCGGTTTCAAATACAAATGCCAGTCTTGCCCATTCACGACTGCGCACGAGTCGGCGCTGGGCGTGCACGTACGTCGCCAGCATCGCCACACGCACGCATGCGCAGACTGCGGACAATCGTTCGTTAGTGCGCGCGGCTTGGGACTACATCGAGCCACCGCGCATAGGAATTTGATAGACACAGTTGTCAGCGATACCGTCTACCGTTGTGACGAGTGCGACATCAGTTTCACATCTGAAGGTGCCAGACGAGTTCACATTCTCACATCTAGTCAACATAGAAGGAAACCTGACTTATGTGAGCCAACTCAAGACCCAAGTCTCCGGAACACTTGCAAGAAATGTGGCGTGGTGTTCCCGTCGCTCAGCGAGCTGATATCGCACTCGAAGATTGACCATCCGGGGCACACCAAGAAAAGCAGCCGGGGTGTCCCTGGTGACTCTTATCCTACTCAGTGCGAAATTTGTGGTGACACGGTGACCAGTCGCAAGGCCCACTGGTGGCACGTCCGCAGAAACCATCCCAACGAGACCGACGCCTACCAACGCGTGGTCGCCGCGGTGTGCGACACATGCGGGAAAGGATTTCGGAACTCGACGAAGCTCCGGCTGCACCAGCTGCGGCACGGCAGCCCCTCGGTCCGCTGCGGCGCGTGCCCGCGGCTGCTGTACGACAAGCACGCGCTGCGCCGCCACGCCGCCGCGCACGCCTCGCGCCGCACGCACCGCTGCCGCGCCTGCGGCCGCGCCTTCACCCGCCTCGCCAACCTGCGCCGCCACCACAAGGTGCACACTGACGCGACTCCATACGAGTGTGACATGTGCAGTAAGAAGTTCAAGTACTCGACGAGCCTCAACTTGCACGTTCGCACGGTGCATTACAAACAGCCGCACCCGCCCAGGTCGAAGAGAGCTAGGTCCACAAGAGAAGCTTTAGAGGATGCATAG
Protein Sequence: MVCYCCVKGCSNSSNSKKKDPNSMTSFHAFPTNPELKTKWLRSIGRPSWAPPTYARICSAHFNFDQINYDGRRIRIKEDAIPVNDLPLNSNFEASSVEVCRICLATDLRMYSLQDSQLGTYIDSIVGISETHNIEGLPQFVCYQCAAHLIKCYKLVEKSMITQATLLDIFAQNGYITKSLIKEQDRLKLNLKSQLSCFKTTNHIHIQYDEDNTTSYFNKTDLINDNEIYLKIEKDLVYNDTELQTELGKIDKGESKINITYEENKLISVEKSNHNNFNLEDCTINSPIQDTKSDDDSESDENVKLNVLRSKIEIRRLKLIRSNVKKKRDKGLTPNETDMKEYFDIVQLSQQEQIEEWKRTKRRPLTSETVYECETCFKTFAHITSYRSHITSHDPDRGKSECAICKLRFKSDVLVRSHANRAHAKKFYCKSCPKVFNNVGVAKKHRLWHVGFKYKCQSCPFTTAHESALGVHVRRQHRHTHACADCGQSFVSARGLGLHRATAHRNLIDTVVSDTVYRCDECDISFTSEGARRVHILTSSQHRRKPDLCEPTQDPSLRNTCKKCGVVFPSLSELISHSKIDHPGHTKKSSRGVPGDSYPTQCEICGDTVTSRKAHWWHVRRNHPNETDAYQRVVAAVCDTCGKGFRNSTKLRLHQLRHGSPSVRCGACPRLLYDKHALRRHAAAHASRRTHRCRACGRAFTRLANLRRHHKVHTDATPYECDMCSKKFKYSTSLNLHVRTVHYKQPHPPRSKRARSTREALEDA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01179552;
90% Identity: iTF_01179552;
80% Identity: iTF_01180371;