Ptre000454.1
Basic Information
- Insect
- Pheosia tremula
- Gene Symbol
- Znf516
- Assembly
- GCA_905333125.1
- Location
- HG995401.1:6535506-6543794[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.061 3.6 8.3 0.4 1 21 154 174 154 175 0.94 2 13 0.0081 0.48 11.1 2.1 3 20 190 207 189 207 0.97 3 13 0.019 1.1 10.0 2.4 1 23 250 272 250 272 0.93 4 13 0.17 10 6.9 0.9 2 23 350 372 349 372 0.94 5 13 2.1 1.3e+02 3.5 0.1 2 20 378 396 377 398 0.90 6 13 0.00028 0.017 15.7 1.6 1 23 406 429 406 429 0.97 7 13 0.00019 0.012 16.2 4.6 1 23 450 472 450 472 0.98 8 13 0.0005 0.03 14.9 2.8 1 23 479 501 479 501 0.98 9 13 5.7e-07 3.4e-05 24.2 3.0 3 23 516 536 514 536 0.96 10 13 2.7e-05 0.0016 18.9 3.2 1 23 542 564 542 564 0.99 11 13 7.1e-07 4.2e-05 23.9 2.4 2 23 571 592 570 592 0.96 12 13 3.9e-08 2.3e-06 27.8 1.5 1 23 598 620 598 620 0.99 13 13 0.0033 0.2 12.3 0.1 1 23 626 648 626 648 0.97
Sequence Information
- Coding Sequence
- ATGGCGCAGGAAGGAATTAAAATTGAAGAACTGTGTCGAACTTGTTTAGTAAAAGATACAGAATTGTGTTCATTATTCGACATTTTTAACGGAAATATTACCCTGGAATATATAGTAACTGCTATAACTGGACTTAAGATAAACAAAAATGATGGGTTGCCATCAACTATATGCTTTGAATGTAAAGAAAAAGCACAAAAAGCATATGATTTTAGGAAGAAATCAGAGGAAGCACATATGTCACTGCAAGTTATTATTAAAAAAGAAAAACAAGATTGGTCTTCAAATAAATCTTTGTGCCAAGTGAATGCAATAAATGTTAAGACTGAAGAGTTACCACTACATGAGCATATTGATAATTCAGATAGTGATTTTAATCTGAATCTTACAAGTGGGACAGACAAAGATGATTTAGACGCTGTAAAAAAAGAAACTGAGGCTCAAGATGAGAAGCTTTGTTTTGAATGTAAAGACTGTTTATTAGTATTTGAGACAGGTAGTAAATTAGATAACCACAAGAAGAAAAAATGTATTAAAGTTGAATATAATGTACCTAGTGGCAATCATTGTCCACTTTGTGGTTCATGTTTTGATGGTGCTGAACATCTTACAAAACATATGTGGGATAAGCACCCTGAGCTCATGGGCCCAAAAAAAAGAGGCAGACCTAAGAAAATAATAACTAATGCAATCCTAAATAAGTTATCAGAAAATGGATTTTATATAACAGCAGTTCCAATTAAAAAGCATGACTGTGCATTTTGTAAGCAGCATTTTAAAGTCAAAGAAGAATTAGTTACACATATGGTAGAACATAAAGATACAATAGTGTTCAATTGTATGATATGCAAGAAAATGTATCTAGAGAGGAAATTATTTGACATGCACACTTGCATTGAAAAGTATAGTGTTACAAACAATCAACAAAATAATTTATCACCTAGTATGGAGGCTAACAAGACCAAACCATTAAATTATTTGAGTGAGATGCCATTACGCCGACTGTTAGAACCGAGTAGCGATTTGGAATGTATACATCTAATCCAGGTCTGTAGTGCCTGTAGCGCTGTATGCCGAACGGAAGAAGACCTTATCAATCACCACGACACCGAACATCCTGAGCTCTCACAACGTTGTAATCTTTGCATGAAGGTATTTGCTTCAGTAAGATCAGCAGCTAGGCACAGAAGTATATGTAAAAAGATAGAAAGGAAGCATAAATGTAACACTTGCGGTCTTCAATTCGCTTACGAAATATCTCTTAACAAACACATCTTAAGATATCACGAGGGCCAAAGCGTTTCTGTTAAATTCATTGATTCAAAAAACAAACTAGCCGAAAAGAAGTTTCAATGTGATACTTGTAATAGACGTTTTTGTAAGCGAGAACTACTAGTTAAACACACAAAAATTCACATGCCCGACAATGGAAATTTCGAATGTGATGTTTGCCAAAAAAAGTTTCACAACGGAGACAAGTTGCAGTCTCACAAGCGAGTTCATGACGTCCAAAGTGACAAAGCCTCATCTAGTAATCATTGTTTATGTCTGTACTGTGGACGAAGCTTTACGAATTCGTCGAATTTTATAGTTCACATGCGCCGGCACACCGGAGAAAAGCCTTACAAATGTGATTTTTGCGGAAAAGGTTTTCCAAGGTCTTCAGATCTACAGTGTCACAGGAGATCCCATACTGGAGAGAAACCGTGTGTCTGTCGTGTCTGTGGGAAAGCTTTCTCTCGTAGCAACAAGTTATCGCGGCACATGCGCGTGCACACGGGACAGCGGCCCTACAAGTGCACGTACTGCGACAAGGCGTTTTCGCAGAGCAACGATCTCACTCTACACATACGACGACACACCGGCGACAGGCCCTACATTTGTGAAGTTTGCGGTGATAGGTTTATTCAGGGTACGGCGTTACAAAACCATAGAAGAGCTCATGGTCACTTTCCAGCGCCCGCAGGCCCGCCTGCCCAGGTATCAGGGCTCACTTATACGGTGCAGAATATTAGCCATAACTGA
- Protein Sequence
- MAQEGIKIEELCRTCLVKDTELCSLFDIFNGNITLEYIVTAITGLKINKNDGLPSTICFECKEKAQKAYDFRKKSEEAHMSLQVIIKKEKQDWSSNKSLCQVNAINVKTEELPLHEHIDNSDSDFNLNLTSGTDKDDLDAVKKETEAQDEKLCFECKDCLLVFETGSKLDNHKKKKCIKVEYNVPSGNHCPLCGSCFDGAEHLTKHMWDKHPELMGPKKRGRPKKIITNAILNKLSENGFYITAVPIKKHDCAFCKQHFKVKEELVTHMVEHKDTIVFNCMICKKMYLERKLFDMHTCIEKYSVTNNQQNNLSPSMEANKTKPLNYLSEMPLRRLLEPSSDLECIHLIQVCSACSAVCRTEEDLINHHDTEHPELSQRCNLCMKVFASVRSAARHRSICKKIERKHKCNTCGLQFAYEISLNKHILRYHEGQSVSVKFIDSKNKLAEKKFQCDTCNRRFCKRELLVKHTKIHMPDNGNFECDVCQKKFHNGDKLQSHKRVHDVQSDKASSSNHCLCLYCGRSFTNSSNFIVHMRRHTGEKPYKCDFCGKGFPRSSDLQCHRRSHTGEKPCVCRVCGKAFSRSNKLSRHMRVHTGQRPYKCTYCDKAFSQSNDLTLHIRRHTGDRPYICEVCGDRFIQGTALQNHRRAHGHFPAPAGPPAQVSGLTYTVQNISHN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -