Basic Information

Insect: Pheosia tremula
Gene Symbol: -
Assembly: GCA_905333125.1
Location: HG995404.1:3179854-3191367[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00026 0.016 15.8 0.9 1 21 223 243 223 244 0.95

2 12 0.059 3.5 8.4 1.0 1 23 253 275 253 275 0.94

3 12 0.12 7.2 7.4 2.4 2 23 282 303 281 303 0.94

4 12 7.1e-05 0.0042 17.6 0.5 1 23 309 331 309 331 0.97

5 12 0.0002 0.012 16.2 1.2 1 23 340 362 340 362 0.95

6 12 0.00023 0.014 16.0 0.2 3 23 370 390 368 390 0.93

7 12 0.0013 0.075 13.7 9.2 1 23 396 418 396 418 0.99

8 12 4.8e-08 2.9e-06 27.5 1.9 1 23 424 446 424 446 0.99

9 12 1.8e-05 0.0011 19.5 0.5 1 23 452 474 452 474 0.98

10 12 6.7e-06 0.0004 20.8 0.5 1 23 480 501 480 501 0.98

11 12 0.016 0.96 10.2 2.2 1 23 507 529 507 529 0.93

12 12 0.00038 0.022 15.3 4.9 1 23 535 557 535 557 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00026	0.016	15.8	0.9	1	21	223	243	223	244	0.95
2	12	0.059	3.5	8.4	1.0	1	23	253	275	253	275	0.94
3	12	0.12	7.2	7.4	2.4	2	23	282	303	281	303	0.94
4	12	7.1e-05	0.0042	17.6	0.5	1	23	309	331	309	331	0.97
5	12	0.0002	0.012	16.2	1.2	1	23	340	362	340	362	0.95
6	12	0.00023	0.014	16.0	0.2	3	23	370	390	368	390	0.93
7	12	0.0013	0.075	13.7	9.2	1	23	396	418	396	418	0.99
8	12	4.8e-08	2.9e-06	27.5	1.9	1	23	424	446	424	446	0.99
9	12	1.8e-05	0.0011	19.5	0.5	1	23	452	474	452	474	0.98
10	12	6.7e-06	0.0004	20.8	0.5	1	23	480	501	480	501	0.98
11	12	0.016	0.96	10.2	2.2	1	23	507	529	507	529	0.93
12	12	0.00038	0.022	15.3	4.9	1	23	535	557	535	557	0.98

Sequence Information

Coding Sequence: ATGGATGACGAAAAACACAATGCTATGGAAAGGGTTCATAAAAAAGTGGAAGAGGACTTAACTACCGAAGACATCACCGAGATAGAAATACCGTATACTTTGTACCAATATCTTTGTTCAGAGCAATGCGACCTTCAAGCTATGTGTCGAATATGCTTATCCACCAGCAACGACATCATGTATCCGTTATTAACGTCAAAAGAAAACAGCCTCTTAGCTGTTATGCTTACAGATTTTACATCTGCACAACTCACTGAAGATGGTCTGCCAGTGAACATTTGTCAATCGTGTCAGACTCAATTGATCCAGTGCTATGAGTTCAAGAACCAATGCATAAAATCTGAATGCCTGCTGAAATCTTTACTGAAAAATGAATTTGTCACGAAAGAGGAACCTACTGATGATAGTATAATTGTAAAGGAAGACATAGAAACCCAAAATGCTAATGAAAATGAAGTTAAAGAGGAGGGAATGCAAGAGAAAGAATTAGATATAGTTGTAGATGTCGAATATCTGGAAGACCTTAGTGATGACGACAAAGATACACTACAAGTTGTACTGAAAACAAAGAAAAGGAAAAAGGAAAAGTTAAATAGCTCTACAACAGATCCAAAAACTCTCCTCAAGGAAGTAGCATCAAAGAAGACACTTGTAGCGTCAAAAAATTATAAATGTTCAGTATGCTCTAAGAAATTCTCCAAAGCTAAAACATACCGGGCCCACGTGAAGGGCAACCGCTGCGGGGCGAAGGGTGCCCACCCTTGTGCACAGTGCAAGGCGTCGTTTGATTCAGAACATGACTTATTGTTGCACTCGTCTATTCACACCGAAGGCCCGCTGTGGAAGTGTATCATATGCCACAAGGAATACGATGGTAAGCCGGCGTTCCACCGCCACATCAAGCGGCACATGGAGAGCAAGCGGCACTCGTGCGCGTGGTGCGGCAAGCGCTTCGCCGAGATGTACGCGCTGCGGCGCCACGCGCGCGTGCACACCGGCCAGCCGCAGGAGAAGGCGCACGCCTGCCACTACTGCGACAAGAGGTACAGCGAGCGCGGGCTGCTGGCGGCGCACGTGGCGCGGCACGCGGGGCTGCGGCCGTGCGCGTGCGCCGCGTGCGGCAAGCGCTTCGCCTCGCCGCGCCTGCTCGCCTCGCACATGCTCGTGCACTCCGACCGCAAGCCGTACAAGTGCCAGTACTGCGAGAAACGGTTCCGGCACGAGTCGACGCGCAACACGCACCACCGCACGCACACGGGCGAAAAGCCGTACGTGTGCTCCGCGTGCGGGAAGTGCTTCATACAGAACTCCAACTTGACGCTGCACATGAGGACACACACAGGTGAACGGCCATATTCATGCTCGATTTGCGAGCGCAAATTCTCGTCGGGATCCGCGCTGAAAACGCACGAGCGGGTCCACACCGGGGAACGCTCTTTCACTTGTAATATTTGTGGTAAAAAGTTCGGGCAGGTGAACCTGCGCGCGCACATGCAGCTGCACTCGGGCGAGCGGCCGCACGCCTGCAGCGCCTGCCCCAAGACCTTCATCAGCGCCTCGCGCCTGCGCGACCACTGCCGCGTGCACACAGGAGAAAAGCCATTCGAATGTAGTGTTTGCTCACGAAAATGTGCGACGAAAAATCATTTAGCGAAACACGTAAAAACGCACCAGCCAAAGACCAAACGAGAGCCAATTGCGATGAAAAATGTTGGATCAAGTGTACATACCAATGTCGTATATGAACAGTACAAAGATAACAATGAACTTGACGAGAACAATGAAACCAACGAGATAATTATAAGTGCGCTACCTTTAGAGGTGACTCATGAAGTACCACTAGAGGTGACAGGTGAACTAGTCTTACAAGACGATAGTAACATAAACACCGAATACCTAGTAGTTGATAATAGCCAAAATAACAATTACCAAAGCAGCGATATAAATACTAATAATGTGAAAATTATAAATAATGACATTGGAGATACTAGTGATGTGAATTTAGTCGCAATGAACGAGGGCGAAGTGAGCTTTACGACTTCGAACCTTGAAGGCACGACAGTAAAACTGTACCAGTTAGACCAAAGTTTAGTGCAAATACACAGTTCCGGCGGACAAGTTACTATTAGCAAAATTACTAGTAAAATGACTGCAAATTTTTAG
Protein Sequence: MDDEKHNAMERVHKKVEEDLTTEDITEIEIPYTLYQYLCSEQCDLQAMCRICLSTSNDIMYPLLTSKENSLLAVMLTDFTSAQLTEDGLPVNICQSCQTQLIQCYEFKNQCIKSECLLKSLLKNEFVTKEEPTDDSIIVKEDIETQNANENEVKEEGMQEKELDIVVDVEYLEDLSDDDKDTLQVVLKTKKRKKEKLNSSTTDPKTLLKEVASKKTLVASKNYKCSVCSKKFSKAKTYRAHVKGNRCGAKGAHPCAQCKASFDSEHDLLLHSSIHTEGPLWKCIICHKEYDGKPAFHRHIKRHMESKRHSCAWCGKRFAEMYALRRHARVHTGQPQEKAHACHYCDKRYSERGLLAAHVARHAGLRPCACAACGKRFASPRLLASHMLVHSDRKPYKCQYCEKRFRHESTRNTHHRTHTGEKPYVCSACGKCFIQNSNLTLHMRTHTGERPYSCSICERKFSSGSALKTHERVHTGERSFTCNICGKKFGQVNLRAHMQLHSGERPHACSACPKTFISASRLRDHCRVHTGEKPFECSVCSRKCATKNHLAKHVKTHQPKTKREPIAMKNVGSSVHTNVVYEQYKDNNELDENNETNEIIISALPLEVTHEVPLEVTGELVLQDDSNINTEYLVVDNSQNNNYQSSDINTNNVKIINNDIGDTSDVNLVAMNEGEVSFTTSNLEGTTVKLYQLDQSLVQIHSSGGQVTISKITSKMTANF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01179709;
90% Identity: iTF_01179709;
80% Identity: -