Ptre019339.1
Basic Information
- Insect
- Pheosia tremula
- Gene Symbol
- -
- Assembly
- GCA_905333125.1
- Location
- HG995425.1:2990136-2994268[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 0.062 3.7 8.3 1.2 1 23 50 72 50 72 0.97 2 29 0.047 2.8 8.7 0.3 2 23 100 122 99 122 0.93 3 29 0.0029 0.17 12.5 1.9 1 23 142 165 142 165 0.96 4 29 0.0023 0.14 12.8 1.5 1 23 170 193 170 193 0.96 5 29 0.058 3.5 8.4 1.1 1 23 198 221 198 221 0.96 6 29 0.00035 0.021 15.4 0.6 2 23 224 246 224 246 0.97 7 29 0.0032 0.19 12.4 0.8 2 21 254 273 253 274 0.94 8 29 0.011 0.67 10.7 2.2 1 23 327 350 327 350 0.95 9 29 0.4 24 5.8 0.0 2 23 423 446 422 446 0.94 10 29 4.1e-05 0.0024 18.3 0.3 3 23 453 474 452 474 0.96 11 29 0.0013 0.076 13.6 0.4 2 23 479 501 478 501 0.95 12 29 0.0072 0.43 11.3 0.8 1 23 506 529 506 529 0.94 13 29 6.7e-06 0.0004 20.8 4.0 1 23 533 556 533 556 0.97 14 29 5.7e-05 0.0034 17.9 0.6 2 23 563 584 562 584 0.96 15 29 8.5e-05 0.0051 17.3 2.7 1 23 629 651 629 651 0.98 16 29 0.036 2.1 9.1 0.0 2 23 680 702 679 702 0.94 17 29 0.0006 0.036 14.7 0.2 2 23 723 745 722 745 0.96 18 29 0.00018 0.011 16.3 0.2 1 23 750 773 750 773 0.92 19 29 0.0032 0.19 12.4 2.8 1 23 778 801 778 801 0.97 20 29 0.00089 0.053 14.1 1.3 3 23 805 826 802 826 0.90 21 29 0.0073 0.44 11.2 0.4 2 22 834 854 833 854 0.95 22 29 0.043 2.6 8.8 1.7 1 23 905 928 905 928 0.95 23 29 0.26 16 6.3 0.3 2 23 1001 1024 1000 1024 0.95 24 29 3.1e-05 0.0018 18.7 0.3 3 23 1031 1052 1030 1052 0.95 25 29 0.48 29 5.5 6.0 2 23 1057 1079 1056 1079 0.94 26 29 0.0032 0.19 12.4 1.7 1 23 1084 1106 1084 1107 0.95 27 29 4.7e-05 0.0028 18.1 5.5 1 23 1111 1134 1111 1134 0.97 28 29 0.012 0.73 10.5 2.1 2 23 1141 1162 1140 1162 0.96 29 29 0.0051 0.3 11.7 1.5 1 23 1168 1190 1168 1190 0.97
Sequence Information
- Coding Sequence
- ATGAGGTACAACTACAGCGAGATGCGTTTCTTTTCAGATGTGTACCTCCCGCGCGCGTTTGACGGCTGTACAACCGAGCGTAGGCGGCAAAACTTGAAAATCCTATTCAACAACACCACTGTTATGCCATTCAAATGGCGCGGCAATTATATATGCTTCTATTGCGGCAAAATAGACACTGACTATCCGGAATTTAAAAAACATACTAAATCTCACGGCCACTGCTGCACCAAAGACTATTCCCTTAAAAAGATCAAAGGCAACTACGTCGAGATCAAACTTGATGTTTCTGATATCACGTGTGATATTTGCAACGAACCTTTTCATCGTCTCAAGGATATAATCGATCATTTGAACGGTAAACACGGGTTAGAGTACGATAAGAACATTGAAACACCATTCCAGGAGTATCGTTTAGCGGATTTCCGATGTCTGTACTGCGAGGAGCAGTTCTCTTACTTCGGCCACTTAGTCAAACATGTGAACAATGTACACCCGCAGAATTGCTTTATTTGTGACGATTGTGGGGTCACTTTCAATAAAAAGAGGGATCTGGCATGTCATATCCGTAATTATCACAAGCAGGGAGGATATCCCTGCGATCTGTGTCCCCAATACTTTGACTCGCTGCTGTGCCTGCGCACACATCGCAATAACGCTCATTTTAGACGTTGCAATAATTGTAATCTCAAGTTTGCATCACTAACGCTTCTTCAGAAGCACATAGCAACCGAACACCCTAACAGAGACAGCAATATAAAGTGCAACTACTGCTCGAAAGAGTTTCATTCTTCTATAGGCTTAAGACAGCACATCAGTAAATGTAAAGTAAAGAGTATATCTCAAGCAACCCCCAACTCCGGCTTTACAGACATCGAAGCCGAGCCTCAAAAGAATAGGAATTTGAAACAAATCAGACTGAACATACAATGTGTCCTGAACATGTCCACCGCGACTCCCTTCAAATTCTTCTCTAAATATTCATGTTTCTATTGCTCGAAAAAGTTTACCGAATTCGATGAAGTGAAACAGCACACGAATTTGGAGCATCCAGTGTGCGATCTTAAATCTAAATGCATGAAGAAGTGCAAAGGCACTAGTGCCTTCGTTAAGATCGACATTACTGCTTTAGCTTGCAAGCTCTGCACACTACCTATGGAAAATTTGGATGTGCTAATCGAACATCTAATTTCGGAGCACAAAGCGATATACGACAAATCAATCCAAGGTTGTTTAGAACCCTTTCAAATTATTAAAGACAACATACCGTGTCCGTTATGTCCCGACCGCGTGTTCCGGTACTTCGGAATCTTACTACGTCACATGAACACTGAGCACACCAATAACAACAGAATCTGCGACTTCTGCGGCCGTAGCTTTCGCAATGTCATCAACTTAAAAGTCCATCTAAGGTACGCCCACACTGGATCCAGCGAATGTGACGTCTGCGGCATAAAATACAAAAACCAGTGGTCTCTCGCTAACCATAAATCCAAAACTCACGATGTTAAAATCTACAAATGTCCAAAATGCCCCGAGCTGTTCAAAGCAGCGTACCACAAGCAGAGACATTTGATTGAAGTCCACAATATCGGGCACAAGTGTAGTGACTGCGACAAAATGTTCACCAAGAATTCGAATATGAGGGAGCATGTCCGACGAACACATCTGAAAGAGAAAAACGTACCCTGCTCTGTGTGCAATGAGAAGTTCTTCGACAAATATTTGCTGCGAAGGCACATGGTCAAACACGACGGTGAAAGAAAGTTCGAGTATGAATTTCTCCCGCGCGCTTATGACTGCGGAACATCCAAGCGTAGGCGACAAAACTTCAAAATTATATTCGACAACACCACAATTATGCCATTCAAATGGCGCGGCAAATATATATGCTTCTATTGCGGCAAAAGTTACACAGACTATTTAGAATTTAAAAAACACACCAATACTCATGGCCGCGACTGTGCTACTCAAAATTATGCTCTAAAACAAATCAAAGGCAACCAGATCGAGATTAAAATCGATGTTTCCGATGTTACTTGCGAATTATGTAACGAGCCTTTCACTCGATTTGCGGAGATAATCGATCATTTAATCGTTAAACATGACTTAGAGTACGATAAGACCATCGTTACACCGTTCCAGGAGTATCGCCTAGTTGATATCCGTTGTCTGTACTGCGAGGAGCAGTTCTCTTATTTAGGTAATTTGATTAAGCACGTGAATAAACTGCACCCACAGAATTGCTTCATATGCAACGAGTGTGGCATCACTTATAATAAAAAAAGGGACTTGGTGAGACACATCGGTAATGTTCATAAGCAGGGGGGCTACCCTTGTGATTTGTGCCACCAAAACTTTGACACCCTACTGTCTCTACGTAAACATCGGAATAAAACTCATTTCAAGTGTTGCAATATTTGTAAACTCAAATTTGCTTCAATGTCGCTTTTAGAAAAGCATATTGAAGTCGAACATCCTGACACAGACGGCACCATGAAATGCAATAGCTGTACCAAAGAGTTTATCTCTGCTGTAGGCTTTAAACAGCATATGAATAAATGTAAAATAAAAATTAACGCGCAAGGAGATACCGGCTTCACGGACATCGAAGATCAGACGCAGAACTATCGAAATTTAAAACAAATACGGCTGAACATACAATGCGTGCTCAATATGTCCAACGCGACACCTTTTAAATTTCTATCCAAATATTCATGTTTCTATTGCCTGAAAAGGTTTACCGAGTTTGACGAAGTGAGACAACATACGAATTTGGAACATCCAGCGTGCGATCTTAAATCTAAGTCCATGAAGAAGTGTAGGGGCTCTAGAGTCTCCGTCAAAATCGATGTTACTGCCTTAGCGTGCAAGCTATGCGCTCTACCCATGGACAATTTGGATACACTTATCGATCATTTGATTTCGGAACATAAAGCGAAATATGACAAGTCGATCCAGGGCTGCTTAATACCCTTTAACATTATCAAAGATAACATACCGTGTCCGTTTTGTCCCAACCGCGCGTTTCATTACTTCGCAATGCTACTGCGCCACATAAACACTGAACACACCAATAACAACAGAATCTGCGACTTTTGCGGTCGTAGTTTTCGCAATGTCGCAAACTTAAAAGTCCATTTAAAGTACGCCCACACTGGGTCCTGTGAGTGTGACATCTGTGGCATGAAACACAAGAACCAGTCGTGTCTCGCCCGTCACAGGGCGAAAACTCACGATGTCAAAGACTTCAAGTGTCCGAAATGTCCCGAACTGTTCAAATCACCGTACCAAAAGCTAAAGCACTTGATTGACCACCATAATATTGGGCACAAATGCAACTACTGCGACAAAATGTTCACGAAGAATTCGTTCATGAAGGACCATATACGGAGAACGCATTTGAAAGAGAAGAATATACGATGCTCTGTGTGTTGCGAGAGCTTTTTCAATAAAGTTGCTTTGAGGAGGCACATGGTGAAACATGACGGTGAGAGGAAGTTCAATTGCACGATTTGTGCCAAAGCGTTCTTGAGGAGCTGTAATTTAATTTCTCATATGTATATCCATAAGAAACGCGGACATGTGTGA
- Protein Sequence
- MRYNYSEMRFFSDVYLPRAFDGCTTERRRQNLKILFNNTTVMPFKWRGNYICFYCGKIDTDYPEFKKHTKSHGHCCTKDYSLKKIKGNYVEIKLDVSDITCDICNEPFHRLKDIIDHLNGKHGLEYDKNIETPFQEYRLADFRCLYCEEQFSYFGHLVKHVNNVHPQNCFICDDCGVTFNKKRDLACHIRNYHKQGGYPCDLCPQYFDSLLCLRTHRNNAHFRRCNNCNLKFASLTLLQKHIATEHPNRDSNIKCNYCSKEFHSSIGLRQHISKCKVKSISQATPNSGFTDIEAEPQKNRNLKQIRLNIQCVLNMSTATPFKFFSKYSCFYCSKKFTEFDEVKQHTNLEHPVCDLKSKCMKKCKGTSAFVKIDITALACKLCTLPMENLDVLIEHLISEHKAIYDKSIQGCLEPFQIIKDNIPCPLCPDRVFRYFGILLRHMNTEHTNNNRICDFCGRSFRNVINLKVHLRYAHTGSSECDVCGIKYKNQWSLANHKSKTHDVKIYKCPKCPELFKAAYHKQRHLIEVHNIGHKCSDCDKMFTKNSNMREHVRRTHLKEKNVPCSVCNEKFFDKYLLRRHMVKHDGERKFEYEFLPRAYDCGTSKRRRQNFKIIFDNTTIMPFKWRGKYICFYCGKSYTDYLEFKKHTNTHGRDCATQNYALKQIKGNQIEIKIDVSDVTCELCNEPFTRFAEIIDHLIVKHDLEYDKTIVTPFQEYRLVDIRCLYCEEQFSYLGNLIKHVNKLHPQNCFICNECGITYNKKRDLVRHIGNVHKQGGYPCDLCHQNFDTLLSLRKHRNKTHFKCCNICKLKFASMSLLEKHIEVEHPDTDGTMKCNSCTKEFISAVGFKQHMNKCKIKINAQGDTGFTDIEDQTQNYRNLKQIRLNIQCVLNMSNATPFKFLSKYSCFYCLKRFTEFDEVRQHTNLEHPACDLKSKSMKKCRGSRVSVKIDVTALACKLCALPMDNLDTLIDHLISEHKAKYDKSIQGCLIPFNIIKDNIPCPFCPNRAFHYFAMLLRHINTEHTNNNRICDFCGRSFRNVANLKVHLKYAHTGSCECDICGMKHKNQSCLARHRAKTHDVKDFKCPKCPELFKSPYQKLKHLIDHHNIGHKCNYCDKMFTKNSFMKDHIRRTHLKEKNIRCSVCCESFFNKVALRRHMVKHDGERKFNCTICAKAFLRSCNLISHMYIHKKRGHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -