Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 2.2e-06 0.004 17.3 0.1 19 44 18 40 11 40 0.95

2 7 0.62 1.1e+03 -0.1 0.4 18 28 47 57 46 70 0.74

3 7 0.39 6.9e+02 0.5 0.8 14 28 70 84 61 92 0.80

4 7 0.96 1.7e+03 -0.8 0.5 19 28 102 111 99 124 0.73

5 7 0.19 3.4e+02 1.5 1.5 9 35 122 144 117 153 0.66

6 7 0.43 7.6e+02 0.4 1.5 16 36 156 178 149 181 0.64

7 7 2.8e-06 0.005 17.0 3.0 9 43 179 208 175 209 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	2.2e-06	0.004	17.3	0.1	19	44	18	40	11	40	0.95
2	7	0.62	1.1e+03	-0.1	0.4	18	28	47	57	46	70	0.74
3	7	0.39	6.9e+02	0.5	0.8	14	28	70	84	61	92	0.80
4	7	0.96	1.7e+03	-0.8	0.5	19	28	102	111	99	124	0.73
5	7	0.19	3.4e+02	1.5	1.5	9	35	122	144	117	153	0.66
6	7	0.43	7.6e+02	0.4	1.5	16	36	156	178	149	181	0.64
7	7	2.8e-06	0.005	17.0	3.0	9	43	179	208	175	209	0.92

Coding Sequence: ATGAATTACGACGAGGACGATTGCCCGTCGGAGATGGACGGAGGGCATCCGTGTAATTATTGTGGGAAGATATACAAGACGGTGAGTACGTTGCAGTCGCACGTTGTGATGATGCACCCCGAGAGCGACGCCGGGCGGCAGTGCGTGGTTTGCGATAAGACGTACCCATCAGTGCTGAGCCTCCAGAACCATACGCGCTACATGCACCGCTACCAGCACCGGTGCGGGGCTTGCTACAAGACATTCGCGAGTCCGGAGCTCCTGAGTGATCATGGGGAAAACTGCGGCAAGAGTGAGACGCCGTGTCCTCGTTGCGGCAAGATATACGACTCCTGGCTCGCTCTCAGGAATCACCATAAGTATAAACACCCCGAAGCGAGGACCCACTGGTGCGATGTGTGCCGCCGCACCTTTTCTAATGACCAGAAGTTGATGAACCATAGGTTGACTATCCACCCTGCCGGGGCTACAGATTGTGGCTGCTGCGGCAGGTCGTTCGCCTCCATGATGGCGTTGCAAAGCCATATGTTGTATAAGCATACCGAAGGCAGGGCCCAGTGCCCCCTGTGCCACAAAGCGTTCGCAAAGAAGACCAACTTACAGAAACATATTGCAAGACAGCATATGAATAGTTTGTTAAAGTCTGAAAATGTATCCAATTCCGAAGAGAATAATTCAGAAAATAATTAA
Protein Sequence: MNYDEDDCPSEMDGGHPCNYCGKIYKTVSTLQSHVVMMHPESDAGRQCVVCDKTYPSVLSLQNHTRYMHRYQHRCGACYKTFASPELLSDHGENCGKSETPCPRCGKIYDSWLALRNHHKYKHPEARTHWCDVCRRTFSNDQKLMNHRLTIHPAGATDCGCCGRSFASMMALQSHMLYKHTEGRAQCPLCHKAFAKKTNLQKHIARQHMNSLLKSENVSNSEENNSENN

Sequence clustering based on sequence similarity using MMseqs2