Pgno009179.1
Basic Information
- Insect
- Pheosia gnoma
- Gene Symbol
- -
- Assembly
- GCA_905404115.1
- Location
- FR989924.1:2000212-2007006[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.1 5.9 7.6 1.2 1 23 269 291 269 291 0.98 2 10 0.0029 0.16 12.5 0.4 1 23 298 320 298 320 0.95 3 10 1.9 1.1e+02 3.6 3.7 1 23 324 346 324 346 0.89 4 10 6.9e-05 0.004 17.6 2.4 3 23 355 376 354 377 0.96 5 10 3.9e-06 0.00023 21.5 0.2 1 23 385 407 385 407 0.98 6 10 4.1e-05 0.0023 18.3 2.8 1 23 412 434 412 434 0.98 7 10 0.11 6.2 7.5 0.3 2 21 444 463 443 468 0.90 8 10 9.9e-06 0.00057 20.2 1.5 1 23 473 496 473 496 0.98 9 10 0.0002 0.011 16.2 0.2 1 23 502 524 502 524 0.92 10 10 3.8e-05 0.0022 18.4 2.9 2 21 534 553 534 554 0.96
Sequence Information
- Coding Sequence
- ATGTCTTCCTTCCTATGTTTCTTGTGCCACAGCACAGTAAACTCCGACACACAGGAGGATATACGCCAGAAATACAGAGAATTAGTCGGCATACATCTATGCCCTGACTCGCATTTATGTCATATCTGCTGTCATATGCTGAATAAATTGTTTTTATTTAAATCTGTTTGCTTAAAAAGAAGTCTAGAATACCCAGTTTTGTTCAGTGAGAAAGGCACAATTAATTTACAACAAAACGATATACAACAACACATATTATGTCCCGAAGATGATTGTTATCAAAAGCAAAACAACAGCCATTATTTTCATGATAACGATGAAGACGACACACAAAATATCAACAGCAATGAATATGTAAAACTTAACAGCGAAAGGAACACCAAAGATGACTTTAACGAATATGTCATCATGAAATTTGAATCTGACAACAATGAATGTATCACAGAAATGAAAGGAGCTTGTGTATCTGATGAGATAGAAGATGATTCTAATCATAATGTGGTTGATGATAGTTGTAATGATGATCCTGTTAATGATAGCTACAGTGACAATGAGTCAGACTTTGAGATAAGTAAAGTGTGTCAGGATGGTGATGAGGAGGTACTTTTACATGATAATGAGGAGCTTAATGATGGTGTGGGATTACTTAATGAGGGGAACACTGAAGACGTAGAAAACACCACAAATAAGAATAAATCAAAGAAGCGTAAGAAAAAGGGTTTCCAGAAGATAGTACTGCCTCTAGAAGAGCAGAAGTGCGCTTTGGATGCCCAGAGAAGAGGCAAGAAATACACAGAAGCTGAGTTCAAATGCTACAATTGTGCTTTGGGTTTCCTTTTCAAGGACACCTACCAAGCGCATATGATGAGACATGAAGAGTCCAACGGTGAATACCGGTGTGATACGTGCACGCTCCGCTTCGCCACACAAGCGGTCCTCCGAACGCACGCGACGTTGCACTCGGAGCGCTACAGATGCACCAAATGCGACGAAACGCTGCGAGTGCGACAGAGACAGACGCATGCGCGACGATGCCACAGGAACGAGAGCGACGCCGCGGCTTGCCATTTGTGCGGGAACGTGTTTAAGGATGCAAGCGGGCTCCAGCAGCATCTGAAAAGATTTCATCACTCGAAGACCAGCACCAGAAGTTACCCATGCAGCGTCTGTGGCAAGACTTATAACAACCAGGCGGCTGTGAGGACGCACATGATTAAACACATCCGTCGTAAATTCACGTGCGACATATGCGAGTGTGCGTTCAGCAGCCCGTACACACTGAACCAGCACAAGAAGAGGCACGCGCGGCGCGAGACAGAGACGCAGCACTTCTGCGCGGCGTGCGGCGTCGGGTACGCCACGCGCAAGAGCCTGCTCGCGCACAGGCGGAACGCGCTCAATCATCAGCAGAGGGCTTATGAATGTCCACACTGCAGCCGAGCATGTCCGAACCAGAAGGCGCTGACCTCGCACATAAACACTGTCCACTCCACTGCCAAGGACTTCTCGTGCCCGTACTGTCCTGCCAGGTACACTAGCCGCAAGTCGCTGGTGCGGCACGTCGGGGGCCACGACCAGAGGAGACAGCCGAGGGTTGCCACTTGCCACTTGTGTGGTAAGCACTTTAAGGGCAACAGCAAGCTAAACCGGCATCTCCGAGAAGTGTGCGAGAAAGAGAAACTAGAGGAAGAACTCGCGTCGTATTACGAACAGCACGTTATGTGA
- Protein Sequence
- MSSFLCFLCHSTVNSDTQEDIRQKYRELVGIHLCPDSHLCHICCHMLNKLFLFKSVCLKRSLEYPVLFSEKGTINLQQNDIQQHILCPEDDCYQKQNNSHYFHDNDEDDTQNINSNEYVKLNSERNTKDDFNEYVIMKFESDNNECITEMKGACVSDEIEDDSNHNVVDDSCNDDPVNDSYSDNESDFEISKVCQDGDEEVLLHDNEELNDGVGLLNEGNTEDVENTTNKNKSKKRKKKGFQKIVLPLEEQKCALDAQRRGKKYTEAEFKCYNCALGFLFKDTYQAHMMRHEESNGEYRCDTCTLRFATQAVLRTHATLHSERYRCTKCDETLRVRQRQTHARRCHRNESDAAACHLCGNVFKDASGLQQHLKRFHHSKTSTRSYPCSVCGKTYNNQAAVRTHMIKHIRRKFTCDICECAFSSPYTLNQHKKRHARRETETQHFCAACGVGYATRKSLLAHRRNALNHQQRAYECPHCSRACPNQKALTSHINTVHSTAKDFSCPYCPARYTSRKSLVRHVGGHDQRRQPRVATCHLCGKHFKGNSKLNRHLREVCEKEKLEEELASYYEQHVM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01180599;
- 90% Identity
- iTF_01180599;
- 80% Identity
- -