Pgno002304.1
Basic Information
- Insect
- Pheosia gnoma
- Gene Symbol
- -
- Assembly
- GCA_905404115.1
- Location
- FR989922.1:2895890-2901821[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.001 0.06 13.9 0.6 1 23 247 269 247 269 0.96 2 10 4.8 2.8e+02 2.3 0.2 3 21 293 311 291 314 0.86 3 10 0.00059 0.034 14.7 1.3 2 23 336 357 335 357 0.95 4 10 0.048 2.8 8.6 1.7 2 23 362 383 361 383 0.96 5 10 0.00065 0.037 14.5 2.1 1 23 390 413 390 413 0.90 6 10 0.13 7.4 7.3 0.6 1 23 419 442 419 442 0.94 7 10 0.00019 0.011 16.2 2.5 1 23 448 471 448 471 0.97 8 10 0.00018 0.01 16.3 1.1 1 23 477 499 477 499 0.97 9 10 1.9e-06 0.00011 22.5 0.7 1 23 505 527 505 527 0.98 10 10 1.7e-06 9.8e-05 22.6 1.3 1 23 533 556 533 556 0.98
Sequence Information
- Coding Sequence
- ATGAGCGTAAATAAGGGCAAAGGCCCTATCATAGACCCGGGTTTGTGCCGGTGCTGCGGCAACATGAAAAAATGCCGCCTGCTAAACGTGGAATATGAATTTTTGGGCCAACCAGAGGTCTACTCCGATATGTTCGTAGATTGCTTCGGTCTTATGTTGTCTCATCTCGATGGCGAGGAGCATGAGCGTTTGATCTGCGCGACGTGCGTGGTGCGTCTGCGCGATGCGCGCGCCTTCCGCGCGCAGGTGCTGTGCTGTGAGCAGAGACTGCTTCATAGCAACATACGGGTCCATGATGCTGAAGGAAGCAGTAATGATCTTAAATCTGAAACCGTAGTCAAGATAGAAGTCGAAGAGTTAGCCGCCGCGCCGCCGCCGACAGCTTCCGTGGTGTCACAGTCTGATGATGCTGTTAATATTGGCGACTGTACAGACAATGACGCCGACAGCATGAAAAGCGAAGTCCCACTGAAATTATTGAAAAAAACATCAAGGAAGAAGAAATTAAAATCAACTAAAACAGGAAAACGGAAATCGAGCAAATTACTGAAGAATGGAGAATGTGTGGTGAACGAGGACAAGAGGAAGCGACTTCGCAAGCCGAAGAGGGAGATAGAATTAGCAACCCAATACATGCCGGTCAAGAAACGAGTCGACAACGAGCACAAATCATTCTCAAACGCCATCGCTATAGTCCAAAACTCCTATGTCTGCCCGTTCGACACCTCGTTCAGTGATTACTACTGCATATACTGCCGGGAGGTGTTCACGGACCCAAACAAACTCCGAGAGCACACCCTCACCCACGATCCCACCACATTCAAAACCTGCATCACCAACAAAAAGTTACTCCTGATCGATATCTACAGAATCGATTGTCGATTATGCACGAACACCATCGACAGCATCGACTCGCTAAAAAAACATTTAGTCGACTCGCACGGGACATCACTATATGACATTTCGAATGAATTTTTGAAGTTTCGTCTGACAGTTACCAATTTGACGTGCACCGAGTGCGACAGCGCGTTTAGTTTTTTTCACGCGTTAAAAAAACACATGGCCGAGCATTTTGGCACGTGCATTTGCGACGTGTGCGGCGCGCATTATTTCGAAGAGCGAATGCTGATTCTACATCAAAAGACGCATCAGAAGATCGACGAGTCCTACCCGTGTAAGGACTGCGGCAAGATTTTCAAATCAAAACACAGCCGGTATTTGCACGAAGCGAAACTACACAAGAAAGAACCGGCATACCAATGTTACAAATGCGACGCCGTGCTATTCTCGTACTCGCTAAGATACCGGCACATGATCGAAGTACACGGTGAACAACGCATGTTCCCGTGCGAGCATTGCGACCGAGCGTACGACAGTCGCAAGTCGTTGAGGGAGCACAACAGGCGGTACCATTTGAAAATATTCAAACACCAGTGCGATTTGTGTGAGAAACGGTTCTATTTGCCTTCGAGATTGAAGGAACACATGGCTATACACACTGGGGAAAGGAATTTTCGTTGCGAGTTCTGCGGCAAGAGTTATCCGCGGTTGAGGGGTTTAAAAGTTCACATGCAATCGCATAGTAACGAGAAGAAGTATAGGTGTGTGCTATGCAACGCCTCGTTCACGCAAAACGTTAATTTAAAGAATCACATGAAAAGGCAACATCAGAGCTTGGATATGGAAGAGTTTCATGAATAG
- Protein Sequence
- MSVNKGKGPIIDPGLCRCCGNMKKCRLLNVEYEFLGQPEVYSDMFVDCFGLMLSHLDGEEHERLICATCVVRLRDARAFRAQVLCCEQRLLHSNIRVHDAEGSSNDLKSETVVKIEVEELAAAPPPTASVVSQSDDAVNIGDCTDNDADSMKSEVPLKLLKKTSRKKKLKSTKTGKRKSSKLLKNGECVVNEDKRKRLRKPKREIELATQYMPVKKRVDNEHKSFSNAIAIVQNSYVCPFDTSFSDYYCIYCREVFTDPNKLREHTLTHDPTTFKTCITNKKLLLIDIYRIDCRLCTNTIDSIDSLKKHLVDSHGTSLYDISNEFLKFRLTVTNLTCTECDSAFSFFHALKKHMAEHFGTCICDVCGAHYFEERMLILHQKTHQKIDESYPCKDCGKIFKSKHSRYLHEAKLHKKEPAYQCYKCDAVLFSYSLRYRHMIEVHGEQRMFPCEHCDRAYDSRKSLREHNRRYHLKIFKHQCDLCEKRFYLPSRLKEHMAIHTGERNFRCEFCGKSYPRLRGLKVHMQSHSNEKKYRCVLCNASFTQNVNLKNHMKRQHQSLDMEEFHE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01073891;
- 90% Identity
- iTF_01180589;
- 80% Identity
- -