Basic Information

Insect: Pheosia gnoma
Gene Symbol: -
Assembly: GCA_905404115.1
Location: FR989923.1:3410877-3418862[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.006 0.34 11.5 1.6 1 23 559 581 559 581 0.98

2 9 1.6e-06 8.9e-05 22.8 1.7 1 23 628 651 628 651 0.96

3 9 0.035 2 9.1 0.0 3 23 658 678 657 678 0.97

4 9 2.3e-05 0.0013 19.1 2.9 1 23 686 708 686 708 0.98

5 9 4.5e-05 0.0026 18.2 0.1 3 23 715 735 714 735 0.99

6 9 1.8e-05 0.001 19.4 3.4 1 23 744 766 744 766 0.99

7 9 2.8e-06 0.00016 22.0 1.1 1 23 772 795 772 795 0.97

8 9 0.045 2.6 8.7 0.6 1 13 801 813 801 824 0.87

9 9 3.9 2.2e+02 2.6 3.9 1 23 832 855 832 855 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.006	0.34	11.5	1.6	1	23	559	581	559	581	0.98
2	9	1.6e-06	8.9e-05	22.8	1.7	1	23	628	651	628	651	0.96
3	9	0.035	2	9.1	0.0	3	23	658	678	657	678	0.97
4	9	2.3e-05	0.0013	19.1	2.9	1	23	686	708	686	708	0.98
5	9	4.5e-05	0.0026	18.2	0.1	3	23	715	735	714	735	0.99
6	9	1.8e-05	0.001	19.4	3.4	1	23	744	766	744	766	0.99
7	9	2.8e-06	0.00016	22.0	1.1	1	23	772	795	772	795	0.97
8	9	0.045	2.6	8.7	0.6	1	13	801	813	801	824	0.87
9	9	3.9	2.2e+02	2.6	3.9	1	23	832	855	832	855	0.94

Sequence Information

Coding Sequence: ATGCTCCACAACACTGGGCCGTACGGGCCCAACGATGTGCCAGTGAACCATCCGAATCCTGTAAATATGTCGCAATTAGGTGGCCACCTAAATATGTCTCATAACATAAATAATATGGGTAAACATGGTCAACAGGGTGTGCAAACGGCAAGTGGACACTACAGTGTACCGGAGTATACAGGATATAGCCACCCTCCTTTGAATATGAGCCCGCAAAATAGTCATATTCCGACATACCCTCATATGGGATTACAACATTTTATGCCACAAAACTCCACTGCAGCAAACGATTTATCCTGGCAGAATGGTATGTTACCAATGAATTTGAACGCACAACATGACCATAACATAAATCTCATGAATTATCACAGTAATTATGACAAAAGATTACACGACACAGTTAACGACGATTTCAAAGAGACATCCGTTCGTAAAGTGCCATTGAACATTCCCCAAATACCTATGAAGACTCCTCATAAACATATCAATCCAGATAATTATGCTTACAATGATAATTACAAATATTTGAATCATAATTTAGATTTAAGCACGAAGCCGCAAGAAAAATTACAAATTGATAATACACGAAGAAAAAATATTGAAAACACAGTGCGGTTGATTGAGAATATATTAATTAACTCATCAAAGAACAAAGACGATGGAAGTAGTTATAATATCAATGATAAAGTTCAACGCACATGCCAATCATCAAGTGATTACGGTATTACACCTGAATCCACACCTCAGACATCTCATATTTATGGAAATAAAACTACTTCTTTGACACCAAATATTTACAGGAATATTGGATCAACATCAGAATCCAATATTTTTAACACTAAGATTGGATCAGTGTCAGAATCAAACATGTATGACAATAAACTTGGATCAAGACCTTGTACGTCCAATATTTATGGCAAACCAGCAATACCCGCTTCCGAATCTTCAAATATATTTCGTGCTACATCACCGTCTAATATTTTTAACACTAAACTTGGAGCAGCATCTCAAGCATCGAATACTTATAGCAGTAAATCTATATCCACTTCTGAAACTCCTAACAGTACGAAGGTTGGATCAACATTGGTATCAAACATGTTCAATACTAGGATCGGCTCAAACACTGAACCATCAAATATTTATAACAATAAATTGAAAGCTACACCGGAAGATTCAAATGTCTTAACTAAATCGATGTCAAAGGTTAATCCAAAAGGCATACTGACATCAGAAATGTCAAATACAAACAATAATAAACCTCTATCATCTGATGAAGCAACAAATAATAGTTTAAAGAGCTCCATAATTACTGAAAAACCGATATTAAAATCTCCTAATACAATGAAGGAAGCTGATAATAAACAAAAACCTGATCAGGTACATGTTAGTGACAACAACGAGGAATCATCAAATGATGAATCATCGGACTCTGATAGCAACGTAAAACCCACAGTAGTAAAAGCAGAAGGAGACCATAAAGAGATTTTGATAGAGTCCAAAATTGAAATTAAAATTGAAAACACCAGTTGTGTTGACATGGACTATTTTCAACCGTTCCTAAGGGATTGCAACGGTGCACAACGTGATGATGTGGATTCCAAGATCATTGATGGTGAAACCAGTGTTGAGGAAGCAACGGATGCCATCAAAAATGGACTCACCCTTCAGGGCTACTATGAATGTCCCCACTGCACTCTGCTGTTCAGAAACCCGAAACGGTTCATAATACACACGAAATGGCATACCTTCGGTCTCACCTACGAGAAGAGAATGGAAGTAGTCAAAGCGAAAGAACAGAGAAAGCAACAGAAGAGGGAGGCGAAGGTGCTAGAACGAATGAACGCTAAAGACGTCACCGACGTGCCAGTTACTGGCAAGGTTTTTGCATGCAAGGATTGCGACAAAGTGTTCAGCGCTAAGAGTAGCTTGAAGAATCACCGTAAGAGGAACCATCCGACGCGGTCTCGCGACTGCAAGATTTGTCGCAAGACCGTGATTGGCTGGGCGGCCATGCGCGCGCACGTGGCGACGCATACATGCGCGAACAGCGGCAGCTACCAATGCGCCGAGTGCCCGAAGAGGTTCAAATATTCGCACTCGCTCGCCAAGCACAAGGACACGCATCTGGAGAAAACACACGGTTGCGCGGTGTGCCCGAAGATGTTCGGCTCGCAGGCGCTGCTCAAGATGCACATGAAAACACACGAGCGCATGCAGCGCGGCACCACGTACCGCTGCACCTACTGCGGGAAAGGATTCTATGAGTGTTATAGCCTGCAGGTTCATGAACGGACACATCGTAACGAGAGGCCGTACAACTGTGAGATATGCAACACAAGTTTTGGTACCAACTCCAGCCTCAAGCGACACACGAAAGTGTCCCACAGCACGTCGAAGCCCCACGAGTGTTCGATATGCCATCGCTCCTTCTCCACGGAACGGATCCGCGATCGCCACGAGACGCGAGTGCACAGCCAGCCGGAGGACTTCAAGTTTCCCTGTAAGCAGTGTAGTTGCAAGTACCTAAAACTGAAGGATCTTCAGAAACACGTCTACAAAGTGCATCCGAAAAATAAACGTAGGAAAAAGGCTGAAAGCGACAGCGAATAG
Protein Sequence: MLHNTGPYGPNDVPVNHPNPVNMSQLGGHLNMSHNINNMGKHGQQGVQTASGHYSVPEYTGYSHPPLNMSPQNSHIPTYPHMGLQHFMPQNSTAANDLSWQNGMLPMNLNAQHDHNINLMNYHSNYDKRLHDTVNDDFKETSVRKVPLNIPQIPMKTPHKHINPDNYAYNDNYKYLNHNLDLSTKPQEKLQIDNTRRKNIENTVRLIENILINSSKNKDDGSSYNINDKVQRTCQSSSDYGITPESTPQTSHIYGNKTTSLTPNIYRNIGSTSESNIFNTKIGSVSESNMYDNKLGSRPCTSNIYGKPAIPASESSNIFRATSPSNIFNTKLGAASQASNTYSSKSISTSETPNSTKVGSTLVSNMFNTRIGSNTEPSNIYNNKLKATPEDSNVLTKSMSKVNPKGILTSEMSNTNNNKPLSSDEATNNSLKSSIITEKPILKSPNTMKEADNKQKPDQVHVSDNNEESSNDESSDSDSNVKPTVVKAEGDHKEILIESKIEIKIENTSCVDMDYFQPFLRDCNGAQRDDVDSKIIDGETSVEEATDAIKNGLTLQGYYECPHCTLLFRNPKRFIIHTKWHTFGLTYEKRMEVVKAKEQRKQQKREAKVLERMNAKDVTDVPVTGKVFACKDCDKVFSAKSSLKNHRKRNHPTRSRDCKICRKTVIGWAAMRAHVATHTCANSGSYQCAECPKRFKYSHSLAKHKDTHLEKTHGCAVCPKMFGSQALLKMHMKTHERMQRGTTYRCTYCGKGFYECYSLQVHERTHRNERPYNCEICNTSFGTNSSLKRHTKVSHSTSKPHECSICHRSFSTERIRDRHETRVHSQPEDFKFPCKQCSCKYLKLKDLQKHVYKVHPKNKRRKKAESDSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01180573;
90% Identity: iTF_01180573;
80% Identity: -