Pgno009334.1
Basic Information
- Insect
- Pheosia gnoma
- Gene Symbol
- -
- Assembly
- GCA_905404115.1
- Location
- FR989924.1:3710920-3718788[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.47 27 5.5 0.2 2 23 218 240 217 240 0.92 2 11 2.5e-05 0.0014 19.0 1.0 1 23 247 269 247 269 0.97 3 11 0.022 1.3 9.7 5.3 1 23 273 296 273 296 0.97 4 11 0.0061 0.35 11.5 3.1 1 23 300 323 300 323 0.97 5 11 0.00065 0.038 14.5 2.4 1 23 326 349 326 349 0.98 6 11 2e-05 0.0012 19.3 1.3 1 23 352 375 352 375 0.97 7 11 0.3 17 6.1 0.6 3 21 384 402 383 407 0.92 8 11 0.00015 0.0086 16.5 0.1 1 23 415 438 415 438 0.92 9 11 0.0021 0.12 13.0 1.2 1 23 444 467 444 467 0.96 10 11 0.00025 0.014 15.8 0.7 3 23 478 498 477 498 0.98 11 11 0.0026 0.15 12.6 0.0 1 23 504 527 504 527 0.95
Sequence Information
- Coding Sequence
- ATGTTCACTCAATTTATATCTGGTGCTCCTCCTCGTATTGAGGGGAGCTTGTGTGACGTGTTATTATGTTGGGAGTGCGTAAACCTGCTTCGTAAGGTGTCTAAATTCCAAAAAAAAGTATGGAGAGCTAAAGAACTATTTCAATTGGGACAGAGATATATAAATGGCAGTCTGTCAACATTGTCAGCCGTGATAAATAACAATTCAGAGCTACACACTGTATATATCAACGAGACAGACATACTTGCAGACGAAGACGCGGATGTTATTAATGATAATGATTCTGTCAATAATATACTGATGAATGATTGTAACAAACATGAAAATAGTATGAAAAGAGAACAAACATATGTTAATATAGCATGTAATGATTCAGAAGGCGAACCAAATGATTTTAATGATAGCGCGAAAGAAGAAAATGATTGTTGTCAAAATGTTAAGGTAAAGAAAGAGACGAAAAATGAAATCAAAAAGAAAAAATCCAGAACTCGATGGGCGAGAGTACGAGTTCTACAAAATAAAAAGTCTAAATTCAAATTAATAACGGATTTTAAAATGGCGGACATATTTAGGAATGTACGAATTAGTCACGACGAAGTGGACACCACTGTGAGGTGTAAAAGAGATGGAGAATACAAAACAAGCAAGTGGAAATGCGATAGATGTATTAAAGGTTTTAGTAAAGAAAGGGCTCTAGCGGTGCATAATAGCAGAATACATAGCAAAAATAAGGCCCCATTTGTATGTGATATATGCAATAAAAGTGTTGACAATAAGCGCCATCTATGGCAGCATATATCACAACACTATTATAAGTACGAGTGCACACTTTGCGACTTTACAACGTGCGACAAATCGCAACAAAAATCGCATTATCAGAGGCGACACAAAACTATTTACCAATGTTTAAAATGTGAACTAAAGTTTGGGACGCGTCGGGAATTCTTCAAGCATTACAAGCAATGGCACGAAATATTTGTATGTGACTATTGTGGACTGGGATTCAAAATGAGATACTGCATCAAGGATCATATCAGAAAACAGCACTCTCCTTTCGAGTGCACCGTTTGCGATAAACGCTTCGCGCGCTACAACGGGCTCTGGAAGCACAACAAGACCCGGCACGGCCCCCCCGCGCGCGCCGCGTACTGCGTGGAGTGCGACCGCCGGTACCAAGACGAGTACCGGTACCGGTGGCATCTGAACAACAGCACGCGGCACCGACCGAAGCGCGTGCGCAGATACCCGTGTCCTGATTGCGAGAAAGTTTTCTCGAAAAATATATACATGACGGAGCATCGGGACTTAGTTCATTTGAAACATTACAGGTTCCGATGCGACTTCTGTGATAAGAATTTTCTCCGAAACGCGGCGTTGCTGAAGCACAACAAGCGGGTCCACGAGGGCGTGCTGCCGCCGAAGAACAAGTTGTGCTACTTGTGTGGCCGCGGCTTCACTACCAACAAAATTCTAAACAATCATATTCGCACTCACACGGGCGAGCGGCCGTTCGCGTGCGCTCAGTGCGACGCGCGGTTCGCGCAGAGCATTGCACTGACATTGCATGTCCGAGCCATACACAGCACGAGCCAGACTAAACAGACCAAGAGCTAG
- Protein Sequence
- MFTQFISGAPPRIEGSLCDVLLCWECVNLLRKVSKFQKKVWRAKELFQLGQRYINGSLSTLSAVINNNSELHTVYINETDILADEDADVINDNDSVNNILMNDCNKHENSMKREQTYVNIACNDSEGEPNDFNDSAKEENDCCQNVKVKKETKNEIKKKKSRTRWARVRVLQNKKSKFKLITDFKMADIFRNVRISHDEVDTTVRCKRDGEYKTSKWKCDRCIKGFSKERALAVHNSRIHSKNKAPFVCDICNKSVDNKRHLWQHISQHYYKYECTLCDFTTCDKSQQKSHYQRRHKTIYQCLKCELKFGTRREFFKHYKQWHEIFVCDYCGLGFKMRYCIKDHIRKQHSPFECTVCDKRFARYNGLWKHNKTRHGPPARAAYCVECDRRYQDEYRYRWHLNNSTRHRPKRVRRYPCPDCEKVFSKNIYMTEHRDLVHLKHYRFRCDFCDKNFLRNAALLKHNKRVHEGVLPPKNKLCYLCGRGFTTNKILNNHIRTHTGERPFACAQCDARFAQSIALTLHVRAIHSTSQTKQTKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01180555;
- 90% Identity
- iTF_01180555;
- 80% Identity
- -