Basic Information

Insect: Pheosia gnoma
Gene Symbol: -
Assembly: GCA_905404115.1
Location: FR989921.1:209547-211897[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.48 27 5.5 0.4 2 23 195 217 194 217 0.88

2 9 0.0031 0.18 12.4 3.2 1 23 252 274 252 274 0.96

3 9 0.022 1.3 9.7 0.0 3 20 282 299 280 301 0.94

4 9 2.7e-06 0.00015 22.0 0.6 2 23 325 346 324 346 0.96

5 9 1.1e-06 6.1e-05 23.3 1.0 1 23 354 376 354 376 0.98

6 9 0.00093 0.053 14.0 1.4 1 23 382 404 382 404 0.97

7 9 1.4e-05 0.00081 19.8 2.2 1 23 410 432 410 432 0.97

8 9 0.0005 0.029 14.9 2.2 1 23 438 460 438 460 0.98

9 9 2.3e-07 1.3e-05 25.4 2.0 1 23 466 489 466 489 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.48	27	5.5	0.4	2	23	195	217	194	217	0.88
2	9	0.0031	0.18	12.4	3.2	1	23	252	274	252	274	0.96
3	9	0.022	1.3	9.7	0.0	3	20	282	299	280	301	0.94
4	9	2.7e-06	0.00015	22.0	0.6	2	23	325	346	324	346	0.96
5	9	1.1e-06	6.1e-05	23.3	1.0	1	23	354	376	354	376	0.98
6	9	0.00093	0.053	14.0	1.4	1	23	382	404	382	404	0.97
7	9	1.4e-05	0.00081	19.8	2.2	1	23	410	432	410	432	0.97
8	9	0.0005	0.029	14.9	2.2	1	23	438	460	438	460	0.98
9	9	2.3e-07	1.3e-05	25.4	2.0	1	23	466	489	466	489	0.98

Sequence Information

Coding Sequence: ATGGAAAACTCTTACTGCCGTTTTTGCGCGGAACCTAAAAATTGCGATAAACTACTAAACCTCCACAATGACGTCATAAAACATAAGGAAATCATACTCAAACTAGCATTCCTGAATGCTGTTTACATCAACATTTCCACTGGCGATATCTTGCCGAAAACAATTTGTCTTGTGTGTTACGACAGCCTCAATAAAGCTTACGAGTTCTTGAATAACGTGAAGCGGGCACAAGATGTGTTATCCAACACATTTCCAACTAATGACGAAACCAAAGGTGACTTGTCCGATGACGATCGAGCTGATGTTTTTGATGATTTTGTCTGTCCCGACGACGTTGAAATGAAACTAGAAGACAAACCACCGGTTAAGTACTCGGAAGAAATAGATATAAGTGTGGAAGTGAAGAGTGAACTGAAGGAGGAACCCGAAGACCATTCTAAATATGACGAGACATTAAACGTCCAAGATATCATAGACGCTGCTATGTACAATGTGCCATTTACTTCTAACGTGACTATATACGCTAAAGAGCTCTCAGATTTAAATAAAAAAGTTATAAAAACATGGAGTGACTACCCGTGGGTGTGTGCATACTGTGACATTGAGTTCTTGAACTTGGATACATTACGATCGCACTGTAAGGTCGTGCACGGGAAGTGTTCGGCATTCACTTGTGTAGACTGCAAGTCGGCGATAAAGGATGACTTCCATTTGTTTGTTAAACACGTAAGGAAGCATAGGAAATGTTTGAGACACCATTGTTACTATTGTGACATAACACTATCTAAGTCGGAGAACCTGAGCTCTCACATCAAGGGACACTTTCAGAGAGCGCAAATTGCATGCCCACTGTGCGGGGAAATACTAAAGAATGAGGATGCATTGAAGATGCATTTACACGACTACGACTCTACTAAACAGAAAAGAAAACCTCGGAGAAAACCAGGTACACCAATCACAATAGATGAACTAACATGTCCGCTATGCAAAAAAGTATATAAGAACCCAAACAGCCTCCGAGACCATATGAAACTGCACACGATCGACCGCAAACGCAACTACACGTGCGACAGATGCGGCAAAATGTTTTACAATAAAGGCACATTAACCTCCCACATATTATCACACGATAAAATACGACCCCATGTCTGTAGGATATGCAATAAGTCCTTTTTATACCCAAATATGTTACGGAGACATGTTGAAATGCACTCGGGAATCAAACCATTCTCCTGCGAGCAATGCGGAAGATGTTTCAGACTGCAATACCAGTTAAATGCCCATAAAATTGTGCATACTGACTCAATGCCATATGTGTGTTCATATTGCAATAAAGCTTTCCGCTTCAAACAGATATTAAAGAACCATGAAAGGCAGCACACAGGGGCAAAGCCCTATTCTTGTCAAAACTGCGGTATGGAGTTTACAAATTGGTCTAATTATAATAAGCATATGAAGAGACGACATGGTATGGACACTTCGAAGAAGAAAATTACACCTGAAGGTGTGTTTCCAGTCAATCCGGAGACGGGGCTGATTATACAGGTGGAGGATCCGGTGGGTACTGAGGAGTGGAAGTCCAGGATCATGGTGCCATGCAAGAGAGGGAAGAAGAAAGTGATTAAACAAGAGAATGTATAG
Protein Sequence: MENSYCRFCAEPKNCDKLLNLHNDVIKHKEIILKLAFLNAVYINISTGDILPKTICLVCYDSLNKAYEFLNNVKRAQDVLSNTFPTNDETKGDLSDDDRADVFDDFVCPDDVEMKLEDKPPVKYSEEIDISVEVKSELKEEPEDHSKYDETLNVQDIIDAAMYNVPFTSNVTIYAKELSDLNKKVIKTWSDYPWVCAYCDIEFLNLDTLRSHCKVVHGKCSAFTCVDCKSAIKDDFHLFVKHVRKHRKCLRHHCYYCDITLSKSENLSSHIKGHFQRAQIACPLCGEILKNEDALKMHLHDYDSTKQKRKPRRKPGTPITIDELTCPLCKKVYKNPNSLRDHMKLHTIDRKRNYTCDRCGKMFYNKGTLTSHILSHDKIRPHVCRICNKSFLYPNMLRRHVEMHSGIKPFSCEQCGRCFRLQYQLNAHKIVHTDSMPYVCSYCNKAFRFKQILKNHERQHTGAKPYSCQNCGMEFTNWSNYNKHMKRRHGMDTSKKKITPEGVFPVNPETGLIIQVEDPVGTEEWKSRIMVPCKRGKKKVIKQENV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01180560; iTF_01073867; iTF_00346093; iTF_00622238;
90% Identity: iTF_01180560;
80% Identity: -