Pgno002261.1
Basic Information
- Insect
- Pheosia gnoma
- Gene Symbol
- -
- Assembly
- GCA_905404115.1
- Location
- FR989922.1:2670182-2673771[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0015 0.087 13.4 0.4 1 23 28 51 28 51 0.93 2 18 0.081 4.6 7.9 0.0 2 21 77 96 76 99 0.89 3 18 0.21 12 6.6 6.2 3 23 124 144 122 144 0.96 4 18 0.00025 0.014 15.8 0.3 1 23 148 170 148 170 0.97 5 18 0.003 0.17 12.4 0.5 1 23 177 200 177 200 0.97 6 18 0.002 0.11 13.0 1.0 2 23 208 230 207 230 0.94 7 18 5.4e-06 0.00031 21.1 0.8 2 23 236 258 235 258 0.97 8 18 1 58 4.5 1.0 1 23 264 287 264 287 0.89 9 18 2.3 1.3e+02 3.4 0.9 1 12 293 304 293 309 0.81 10 18 0.34 20 6.0 0.2 2 23 420 442 419 442 0.90 11 18 0.028 1.6 9.4 1.9 2 23 465 486 464 486 0.97 12 18 0.00042 0.024 15.1 0.2 1 23 490 512 490 512 0.97 13 18 0.0069 0.4 11.3 2.6 1 23 517 540 517 540 0.87 14 18 0.34 20 6.0 1.0 2 23 548 570 547 570 0.94 15 18 5e-05 0.0029 18.0 1.8 2 23 578 600 577 600 0.96 16 18 2.8e-05 0.0016 18.8 1.9 1 23 606 628 606 628 0.98 17 18 9.4e-06 0.00054 20.3 2.9 1 23 634 656 634 656 0.98 18 18 8.8e-05 0.0051 17.3 3.0 1 23 662 685 662 685 0.98
Sequence Information
- Coding Sequence
- ATGAAGAAGCAATGGCATAACCTAACCACTTTGCTCAAATTCTCGAACGCAACGCCGTTCAAGGATCGCAACGACGCCGGCTACGTGTGCGCTTACTGTTTCAAAACGTATCCTAACCCCGACGTATTGCGGGCTCACACACACGCCGACCACGCCACGGAGAAGCCCTCGTACAAGGCCGGCTCCGGGATGGCCAGTTTCGTCGCTTTTCTCGACATCGTCGACCTCAAGTGTACGATCTGTGACCTACCTATCGACACGCTCAACTCGCTCACCAATCATTTGGTCGACGTACACGAGAAGAAATACTACCAGAACGTCACTGATTACTTTCAACCGTTCAAATTGAGCAACGAACAACAAATGCATTGTTGTCTATGCAACGAGGGGTTCCACAACATGAAACTGTTGATGCAACACATGAATATGCATTACAGAAACTTTATATGCACTATATGTGGCGCGGGGTTCGTCAACTCGTTCCGTCTGAACCGACACGAGACGACGCACGTCAAAAAAAAGTCCAGCTTTCCTTGCCGGCATTGCGGCGAAGTTTTCGCTGCTGAGTCCAAAAAGAAGGCTCACGTGAACACTCAGCATAAGGGCATCGCTGGCGACAGCGTCTGTCAGATATGCAAAGCTAGATTCAAGAATTACTATCAAAAGACTAGGCATATGATACAAGTGCATAACGCCCAAGGGATCAAATGCGATCTCTGCGAGAAAAAATTCAATTTAAAGTCCAATTTAATGCTTCACATGAGAAGTGTACATTTAAAAGAGCGTCCGTACGAGTGCTCCGTGTGCAGCATGGGGTTTTTTATCAAACGACATATGCTTGGCCACTATATGGCGACACATACCAACGAGAGGAAGTTCAAATGTGAAGTGTGCGGTACTGGCTGCGATACAGACACTAAATTAATGCCAGATGTAAGTAAAGCATCAAATAAATTGAAGGTTGCCATCAAAAAGAAATGTCCAAAGAGAGGACTCTCAAATAAACCGTTGGGTACGCCAAGGGAGATAGATATGCACTTACATAATCTTAGAACGATACTCTTAAATTCCAACGCTACGCCAATAAGTAGTCACGGCGGGTTCGGATACACGTGTTGCTTCTGCAAAGACCACCACGTGAATGCGTCTGACCTCAAAATTCATACCATAGACAAGCACGGTAGCACAGCGATTAACAAATTCATGAACGGTACCCCTATGCCTTTATATGTCGTCAAATTAGACATCACTAGCCTACATTGCCAGATCTGTAGGAAGGCCATTGATACCTTGGAGGAGTTATTGGATCATTTGACAGATGAACACGATGCAAAGATATATAAAGACATCAACAGCCATATCATACCGTTTAAGTTTGACAGCGAAGTCCTAAAATGCGTGATGTGTTCAATTAATTGCAACAATTTTAAGCTACTACGGGAACATATGAACATCCACTATAGGAACTACGTTTGTGACATTTGCGATTCGTCTTACGTCAATAAACGAACGTTGGTAAATCATTTAGGCAGGCACAAGCAGGGCGAATTTAAGTGCACCCACTGCCCAAAAGTGTTCGACACTCGAGCGAAGAAATTGGATCACGAGAAGTTTGTACATATCACGGACTACAGGCGAAGCAAATGTCAAATCTGCAACGACAAGTTCGCGAGTAACGCTGACAAACATGACCATATGGTCAGGGTGCACGGCGCTCGGCCTCTGAATCTGAAATGTAAGGCTTGCGACAGAACATTCCAGAGACGGGACACGCTCTCGAGGCATATTAAACGCGATCATTTGCTGGAGAAACGATACGAGTGTAGTCAATGTGATATGAAGTTCTATTCTAAGTTGCAACTGAATAACCATATGCTTAAGCATACAGGTGTGAAAGAGCATAGGTGCGAGTATTGCTCGAAGGCGTTTGGAAGGAGGTATACGTTGAAGGAGCATTTGAGAATACACACGGACGATAGGAGATTCAAATGTGAGCATTGTGGACAGGCGTTTGTGCAGAAGTGCAGCTGGAAGGGTCACATGCAGTCTGTGCATGGCGAATGCTTTTAG
- Protein Sequence
- MKKQWHNLTTLLKFSNATPFKDRNDAGYVCAYCFKTYPNPDVLRAHTHADHATEKPSYKAGSGMASFVAFLDIVDLKCTICDLPIDTLNSLTNHLVDVHEKKYYQNVTDYFQPFKLSNEQQMHCCLCNEGFHNMKLLMQHMNMHYRNFICTICGAGFVNSFRLNRHETTHVKKKSSFPCRHCGEVFAAESKKKAHVNTQHKGIAGDSVCQICKARFKNYYQKTRHMIQVHNAQGIKCDLCEKKFNLKSNLMLHMRSVHLKERPYECSVCSMGFFIKRHMLGHYMATHTNERKFKCEVCGTGCDTDTKLMPDVSKASNKLKVAIKKKCPKRGLSNKPLGTPREIDMHLHNLRTILLNSNATPISSHGGFGYTCCFCKDHHVNASDLKIHTIDKHGSTAINKFMNGTPMPLYVVKLDITSLHCQICRKAIDTLEELLDHLTDEHDAKIYKDINSHIIPFKFDSEVLKCVMCSINCNNFKLLREHMNIHYRNYVCDICDSSYVNKRTLVNHLGRHKQGEFKCTHCPKVFDTRAKKLDHEKFVHITDYRRSKCQICNDKFASNADKHDHMVRVHGARPLNLKCKACDRTFQRRDTLSRHIKRDHLLEKRYECSQCDMKFYSKLQLNNHMLKHTGVKEHRCEYCSKAFGRRYTLKEHLRIHTDDRRFKCEHCGQAFVQKCSWKGHMQSVHGECF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -