Pgno012115.1
Basic Information
- Insect
- Pheosia gnoma
- Gene Symbol
- -
- Assembly
- GCA_905404115.1
- Location
- FR989911.1:1063877-1072523[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0015 0.087 13.4 1.3 1 23 196 218 196 218 0.98 2 12 4.6e-05 0.0026 18.1 0.9 2 23 226 247 225 247 0.95 3 12 0.05 2.9 8.6 0.6 1 23 251 273 251 273 0.97 4 12 0.021 1.2 9.8 2.3 1 23 278 301 278 301 0.98 5 12 0.0033 0.19 12.3 0.2 1 23 305 328 305 328 0.94 6 12 0.0012 0.067 13.7 0.1 1 20 344 363 344 365 0.94 7 12 3.5e-05 0.002 18.5 1.6 3 23 379 400 379 400 0.98 8 12 0.11 6.1 7.6 1.0 2 23 420 442 419 442 0.97 9 12 4.1e-06 0.00024 21.4 0.5 1 23 453 475 453 475 0.99 10 12 1.9e-05 0.0011 19.4 1.4 1 23 481 503 481 503 0.96 11 12 0.0001 0.0059 17.0 0.5 1 23 509 531 509 531 0.98 12 12 4.5e-06 0.00026 21.3 0.3 1 23 537 560 537 560 0.98
Sequence Information
- Coding Sequence
- ATGCCAATGGAAAAAATAAAACTAATCAACAGAGAAGAATTGAAGATAGTTTCAAATCTCTCACACACTCACATAACAGAAGATTCAGCTATTCACTATGTGTTCAATGATTCAATGAATAGCTGTATCAAAATTGAATTTGATGATGAAAGTTCCAAATCTCCTCAAGCGGGGTATGTGAAAGAGGAAGATGATGATGGTGACTTTCCACTACTAGATCATGGGTTTTCGAGTGATGAAAATGAGCCTCTGTCCCATCATAAAGAGAAGAAGGTTAAAAAGAAAATGAAGGTAGATGCAGAAGGAAAAGTTGAAAATGATGTTGTATTTAAAGTTGCCGAGTTTTTAGAAGCCAATGAAGACCTGCCAGTATTAGAAATGGAAATGCCAGAAGTATTACGGCCTAAGAAACGGGGACGTCCCAAAAAGATCAAGGCGGAGATGCCTACAGAGAGCAAGGGTGGAAGAACCAAGGCACCAGCGTCTGAACTAGATGAGTTTGTCACTGTGATTAATTTATCGGTGGAAGAACAAATGGAGGAGATCAACAAACGTCAACAGTCGTCCAACTATTTGAACTCCCCGTTCCAGTGCAATCTTTGCTTCAAAGGGTTCATTGACACGGACGCGTGGCAACATCACGTATCTAAACATGCACTGTCCGCGGGAGATATAGAATGTCCCATATGCAAATTCAGATTCAAAACTAAACGCGCACTCCAGAAACACGCGTCCAATCATGAGAAAAAATACGCTTGCAAATCCTGCCCCTATATCTCTACAAATACTACTCAAGCGAGGCAGCATCAAAGATGGCACAAAGGCGTTACGTACAAGTGTCAACACTGTGCGGACATTTTCACTAAATGGACATCGTACATGAGCCACGTGCGAATCAAGCATCCCTCCGAGTTCATCTGCGGCGTGTGCGGCTACTCTTATGTCAGCAAGCTTGGCCTTACAATGCACAAGACTATGATGCACAAAGACTATGTGGAAAAGCCTGACGACAGCGACAAAGACACCGGCCATTATTGCCCAGAGTGCGACGTCAAATTCGTCTCCGCGGAAGCATGGAAACGACACCTGGTGATGTCCGTCAAGCACACCAGAAGTATGGACTCTATCAAAGGGTGTCGCATGTGCGGCGAAACGTTCAAGAACGCGGAGGAACTCCGGGTTCATCACCGCAAGGAACATGCTCGGAAGCGACCCAAGAACTACGGGAAGAAGCCGAACAACACCAAGTGGCCCTCCAAGTGTGAGCATTGTTCGGAGGAGATCCCGAACGCGCGCCAGTACTGGACCCACTTCCGTCGCGTGCACCCCGACCAGACCTACCCGATACAGAAGGACTACGTGTGCGATATTTGCGGGAAGAGCTTCAGGGGCAACGCGTTCCTGGTGTACCACAAGCGCACGCACTTCTCGGACCGGGCGCACGCGTGCGCGACGTGCGGGAAGGCGTTCTTCAACCGCACCAACCTGCAGGTGCACGAGAAGACGCACTCCGACTCGCGGCCCTACCCCTGCAGCGTCTGCTTCAAGGCCTTCAAGGGCAAGGGCGCCTTGGACCGACACTTCAGGAGTCACACAGGCCTCAAGCCCTACGAATGTGAGGTGTGCGGCAAAGCGTTTAGTCAATCGAATAGTAGGAAGCTTCATGTGAGAACAGTGCATCTGAAGCAGCCGGCTCCTTATGTCAGCCGGTCCAGGATCGAGCGCAGGAACAAACCCTTGCCGCCAAAGGAAACAACCACTGAACAATTCATATATTGA
- Protein Sequence
- MPMEKIKLINREELKIVSNLSHTHITEDSAIHYVFNDSMNSCIKIEFDDESSKSPQAGYVKEEDDDGDFPLLDHGFSSDENEPLSHHKEKKVKKKMKVDAEGKVENDVVFKVAEFLEANEDLPVLEMEMPEVLRPKKRGRPKKIKAEMPTESKGGRTKAPASELDEFVTVINLSVEEQMEEINKRQQSSNYLNSPFQCNLCFKGFIDTDAWQHHVSKHALSAGDIECPICKFRFKTKRALQKHASNHEKKYACKSCPYISTNTTQARQHQRWHKGVTYKCQHCADIFTKWTSYMSHVRIKHPSEFICGVCGYSYVSKLGLTMHKTMMHKDYVEKPDDSDKDTGHYCPECDVKFVSAEAWKRHLVMSVKHTRSMDSIKGCRMCGETFKNAEELRVHHRKEHARKRPKNYGKKPNNTKWPSKCEHCSEEIPNARQYWTHFRRVHPDQTYPIQKDYVCDICGKSFRGNAFLVYHKRTHFSDRAHACATCGKAFFNRTNLQVHEKTHSDSRPYPCSVCFKAFKGKGALDRHFRSHTGLKPYECEVCGKAFSQSNSRKLHVRTVHLKQPAPYVSRSRIERRNKPLPPKETTTEQFIY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01180529; iTF_01073816; iTF_00622202;
- 90% Identity
- iTF_01180529;
- 80% Identity
- -