Basic Information

Insect: Pheosia gnoma
Gene Symbol: -
Assembly: GCA_905404115.1
Location: FR989922.1:2628759-2630447[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.06 3.4 8.4 1.0 3 23 2 22 1 22 0.96

2 16 0.053 3 8.5 0.0 2 23 50 72 49 72 0.95

3 16 0.31 18 6.1 3.2 2 23 93 115 92 115 0.96

4 16 0.00034 0.019 15.4 2.5 1 23 120 142 120 143 0.95

5 16 2.2e-05 0.0013 19.1 0.8 1 23 147 170 147 170 0.94

6 16 0.00069 0.04 14.4 1.3 2 23 173 195 172 195 0.96

7 16 0.0015 0.087 13.4 0.2 2 20 201 219 200 221 0.93

8 16 0.0026 0.15 12.6 3.5 1 23 266 289 266 289 0.95

9 16 0.025 1.4 9.5 0.1 2 23 318 340 317 340 0.94

10 16 3e-05 0.0017 18.7 0.1 1 23 362 385 362 385 0.96

11 16 5.6e-05 0.0032 17.9 0.3 3 23 392 413 391 413 0.93

12 16 3.1e-05 0.0018 18.7 0.5 1 23 419 442 419 442 0.95

13 16 0.0031 0.18 12.4 1.8 2 23 448 470 447 470 0.96

14 16 0.00011 0.006 17.0 2.1 1 23 474 497 474 497 0.97

15 16 0.42 24 5.7 0.5 2 23 504 525 503 525 0.95

16 16 0.016 0.89 10.2 1.5 1 23 531 553 531 553 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.06	3.4	8.4	1.0	3	23	2	22	1	22	0.96
2	16	0.053	3	8.5	0.0	2	23	50	72	49	72	0.95
3	16	0.31	18	6.1	3.2	2	23	93	115	92	115	0.96
4	16	0.00034	0.019	15.4	2.5	1	23	120	142	120	143	0.95
5	16	2.2e-05	0.0013	19.1	0.8	1	23	147	170	147	170	0.94
6	16	0.00069	0.04	14.4	1.3	2	23	173	195	172	195	0.96
7	16	0.0015	0.087	13.4	0.2	2	20	201	219	200	221	0.93
8	16	0.0026	0.15	12.6	3.5	1	23	266	289	266	289	0.95
9	16	0.025	1.4	9.5	0.1	2	23	318	340	317	340	0.94
10	16	3e-05	0.0017	18.7	0.1	1	23	362	385	362	385	0.96
11	16	5.6e-05	0.0032	17.9	0.3	3	23	392	413	391	413	0.93
12	16	3.1e-05	0.0018	18.7	0.5	1	23	419	442	419	442	0.95
13	16	0.0031	0.18	12.4	1.8	2	23	448	470	447	470	0.96
14	16	0.00011	0.006	17.0	2.1	1	23	474	497	474	497	0.97
15	16	0.42	24	5.7	0.5	2	23	504	525	503	525	0.95
16	16	0.016	0.89	10.2	1.5	1	23	531	553	531	553	0.96

Sequence Information

Coding Sequence: ATGTGTTTCTTTTGCGGTGACGACTTCAACTCCCACGATGCCCTTATAAAACACACCATAAGTCATGGACAATGTTCGGACACAGATAGGGCAATAAAACTGGTCAAGGCTCCTGATAGCGAGATTAAAATCGATGTATCGGTGATTGTTTGCAGAATTTGCTCGGTATCATTCGATTCCTTTGATGATATTGTAAATCATTTGATGGTCGAGCATAATTTACCTTTTAGTAAGGATGTAGATATGATGATATCTCCATATAAACTGGTGGGCTTAAAATGCTTGCACTGCAACGATAGTTTTGACTATTTCACTAAACTGGTTACACATACGAATACTAACCATCCAAATAGTAGTTTCTTTTGCGACGAATGTGAACAAAGATTCAATAAAAAGAGGGATTTGGACGCGCACGTGAGGTCTCATCATAAGAAAGATTTTCCTTGTTCGAAATGCCAACAGAATTTCACATCAAACGCAGATTTGCAGAGACACCGGATCAACGATCATTTCTCGTCCTGTAACATATGTTTTCAGAGTTTCCCTACGTTAAGCAAACGCCTGAGACATATGAGGAATGAGCATACCTCAGACCAAACTCAATGCGGTTTCTGCGATGAGAATTTCTCAACTAAACAGGCTCTTCTACGCCATGCAGCGAAATGCGACTCCAATGAAAAAGTCGTTTTGGCCGACGACGAAGATAAAAGGCATTCTGTCAAAGAATTGCGAAATAACATAGCGTCTATTGTCAATATGTCCACCGCGATGCCGTTCAAGTTTTTTATGAGCAAATTCCGATGTTTTTACTGCACTAAAGATTTTATAAAATGCGACGATTTGAAGGAACACACGACTGTGGAACATCCTCTATGTGATGTTACATTCAAATCGATGAAGCTACGTAACCGATACGACGGAGTCCAAATTAAAATTGACACGTCATCCCTATCTTGCAAACTGTGCTTTGAGAGTTTGCGAGATTTGGACGATTTGGTAGAGCATATTGATTCTGAGCACAAGACCAAATTCAATAGATCCGTAACGAGCGATTTGCAGCCCTTCAAATTAGTGAACGACAACTTTCCGTGTCCTTATTGCGGTGAAGTTTACAGATATTTTGGTTTACTACTCAAACACATTAGTGTCACGCACACTGACAACAAAAACATATGCGTTTACTGTGGGAAATCCTTTAGGACCGATCCTAACTTGCGTGCGCACGTTTCCCAGCGCCATAGTCAGGTGGGACGATACAAATGCAAGAACTGTGATCGACTTTTCCGTACAAACGCAGCCTTAAAGATTCACTTAGGTAAGGTGCACGGCAAAAAGTTTGTTAAATGCTCGGCGTGTGCTGAGAAATTTACGTCGCATTACCTAATGCAACGGCATATGCTGACGTCACACGGTACAGGGCACAAATGCGATTACTGCGGCAAACTCTTCGTCAAAAACTCTTACGTGGATAATCATATAAGACGGTTACATTTGAAGGAGAGGAATGTGGAATGTTCCGTGTGCTTCGACAGGTTCTTTGACGCCCAGCGCTTGAAGATGCACATGGTGAAACATATCGGCGAAAGGAACTTCCATTGTGACGTTTGTGGCAAGAAGTTTCTTTGGAAGAGGAATTTGAGGGGGCATATGGCTTCACACTATAGAAATGACGCTCAATTTAAAATGTAA
Protein Sequence: MCFFCGDDFNSHDALIKHTISHGQCSDTDRAIKLVKAPDSEIKIDVSVIVCRICSVSFDSFDDIVNHLMVEHNLPFSKDVDMMISPYKLVGLKCLHCNDSFDYFTKLVTHTNTNHPNSSFFCDECEQRFNKKRDLDAHVRSHHKKDFPCSKCQQNFTSNADLQRHRINDHFSSCNICFQSFPTLSKRLRHMRNEHTSDQTQCGFCDENFSTKQALLRHAAKCDSNEKVVLADDEDKRHSVKELRNNIASIVNMSTAMPFKFFMSKFRCFYCTKDFIKCDDLKEHTTVEHPLCDVTFKSMKLRNRYDGVQIKIDTSSLSCKLCFESLRDLDDLVEHIDSEHKTKFNRSVTSDLQPFKLVNDNFPCPYCGEVYRYFGLLLKHISVTHTDNKNICVYCGKSFRTDPNLRAHVSQRHSQVGRYKCKNCDRLFRTNAALKIHLGKVHGKKFVKCSACAEKFTSHYLMQRHMLTSHGTGHKCDYCGKLFVKNSYVDNHIRRLHLKERNVECSVCFDRFFDAQRLKMHMVKHIGERNFHCDVCGKKFLWKRNLRGHMASHYRNDAQFKM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01180513;
90% Identity: iTF_01180513;
80% Identity: -