Basic Information

Insect: Pheosia gnoma
Gene Symbol: -
Assembly: GCA_905404115.1
Location: FR989922.1:2623360-2625195[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 2.5e-05 0.0015 19.0 1.9 1 23 43 65 43 65 0.98

2 15 0.023 1.3 9.6 0.3 2 23 93 115 92 115 0.93

3 15 0.0012 0.068 13.7 1.7 1 23 135 158 135 158 0.96

4 15 0.0054 0.31 11.6 1.5 1 23 163 186 163 186 0.95

5 15 7 4e+02 1.8 2.9 1 23 191 214 191 214 0.96

6 15 0.0017 0.097 13.2 0.3 2 23 217 239 217 239 0.93

7 15 0.0015 0.084 13.4 0.8 2 21 247 266 246 267 0.94

8 15 0.0051 0.29 11.7 2.2 1 23 320 343 320 343 0.95

9 15 0.18 10 6.8 0.0 2 23 416 439 415 439 0.94

10 15 2.1e-05 0.0012 19.2 0.3 3 23 446 467 445 467 0.96

11 15 3.9e-05 0.0022 18.4 2.5 2 23 472 494 471 494 0.94

12 15 0.0033 0.19 12.3 0.8 1 23 499 522 499 522 0.94

13 15 3.1e-06 0.00018 21.8 4.0 1 23 526 549 526 549 0.97

14 15 2.6e-05 0.0015 18.9 0.6 2 23 556 577 555 577 0.96

15 15 2e-05 0.0011 19.3 1.1 1 23 583 605 583 605 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	2.5e-05	0.0015	19.0	1.9	1	23	43	65	43	65	0.98
2	15	0.023	1.3	9.6	0.3	2	23	93	115	92	115	0.93
3	15	0.0012	0.068	13.7	1.7	1	23	135	158	135	158	0.96
4	15	0.0054	0.31	11.6	1.5	1	23	163	186	163	186	0.95
5	15	7	4e+02	1.8	2.9	1	23	191	214	191	214	0.96
6	15	0.0017	0.097	13.2	0.3	2	23	217	239	217	239	0.93
7	15	0.0015	0.084	13.4	0.8	2	21	247	266	246	267	0.94
8	15	0.0051	0.29	11.7	2.2	1	23	320	343	320	343	0.95
9	15	0.18	10	6.8	0.0	2	23	416	439	415	439	0.94
10	15	2.1e-05	0.0012	19.2	0.3	3	23	446	467	445	467	0.96
11	15	3.9e-05	0.0022	18.4	2.5	2	23	472	494	471	494	0.94
12	15	0.0033	0.19	12.3	0.8	1	23	499	522	499	522	0.94
13	15	3.1e-06	0.00018	21.8	4.0	1	23	526	549	526	549	0.97
14	15	2.6e-05	0.0015	18.9	0.6	2	23	556	577	555	577	0.96
15	15	2e-05	0.0011	19.3	1.1	1	23	583	605	583	605	0.97

Sequence Information

Coding Sequence: ATGCGTTTGTTTTCAGATGTGTACCTCCCGCGCGCGTTTGACGGCTGTACAACCGAGCGTAGGCGGCAAAACTTGAAAATACTATTCAACAACACCACAGTTATGCCATTCAAATGGCGCGGCAATTATATATGCTTCTATTGCGGCAAAATATACACCGATTATGGGGAATTTAAAAAACATACTAAATCTCACGGCCACTGCTCGATCAAAGACTATTCCCTTAAAAAGATCAAAGGCAACTACGTCGAGATCAAAATTGATGTTTCTGATGTCACTTGTGAAATTTGCAACGAACCTTTTCATCGCCTCAAGGATATAATCGATCATTTGAACGGTAAACACGGGTTAGATTACGATAAGAACATTGAAACACCTTTCCAGGAGTATCGTTTAGCGGATTTCCGATGTCTGTACTGCGAGGAGCAGTTCTCTTACTTCGGCCATTTAGTCAAACATGTGAACAATGCACACCCACAGAATTGCTATATTTGCGACGATTGTGGTGTCACTTTCAATAAAAAGAGAGATATGGCATGTCACATCCGTAACTATCACAAGCAGGGAGGATATCCGTGCGATCTGTGTCTCCAACACTCTGACTCGCTGCTGTGCCTGCGCACACATCGCAATAAAGCGCATTTTAGACGTTGCTATAATTGTGATCTCAAGTTTGCATCACTAACGCTTCTTCAGAAGCACATAGAAGCCGAACACCCTAACAGAGACAGCAACATAAAGTGCAACTACTGCTCCAAAGAGTTTCATTCTTCTATAGGCTTAAGACAGCATATCAGTAAATGTAAAGTAAAGAGTGTATCTCTAGGAACCCCCAACACCGGCTTTACAGACATCGAAGCTGAGCCTCAAAAGAATAGGAATTTGAAACAAATCAGACTGAACATACAATGTGTGCTGAACATGTCCACCGCGACTCCCTTCAAATTCTTCTCTAAATATTCATGTTTCTATTGCTCGAAAAAGTTTACCGAATTCGATGAAGTGAAACAGCACACGAATTTGGAGCATCCAGTATGCGATCTTAAATCTAAATGCATGAAGAAGTGCAAAGGCAATAGTGTGTTCGTTAAAATCGACATAACTGCCTTAGCTTGCAAGCTCTGCACACTACCTATGGGAAATTTGGATGTTCTAATCGAACATCTAATTTCGGAACACAAAGCTAAATACGACAAATCAATCCAAGGTTGTTTAGAACCCTTTCGAATTATTAAAGATAACATACCGTGTCCATTATGTCCCGACCGCGTGTTTCGGTACTTCGGGATCTTACTACGTCACATGAACACTGAGCACACGAATAACAACAGAATCTGCGACTTCTGCGGCCGTACCTTTCGCAATGTCATCAACTTAAAAGTCCATTTAAGGTACGCCCACACTGGATCCTGCGAATGTGACGTCTGTGGCAAAAAATTCAAAAACCAGTGGTCCCTCGCTAACCACAAATCTAAAACTCACGATGTTAAAATCTACAAATGTCCCAAATGCCCCGAGCTGTTCAAAGCAGCGTACCACAAGCAGAGACATTTGATTGAGGTCCACAATATTGGGCACAAGTGTAGTGATTGCGACAAAATGTTCACCAAGAATTCGAATATGAGGGAGCACGTTCGTCGGACACATTTGAAAGAGAAAAACGTACCCTGCTCTGTGTGCAATGAGAAGTTCTTCGACAAATACTTGCTGAGAAGGCATATGGTGAAACACGACGGTGAAAGAAAGTTCGAATGTACGATTTGTTCCAAAACTTTCCTAAGGAGAAGCAATTTGCGTTCTCACCTGGATATCCATAAGAAACACGGGCACGTATAA
Protein Sequence: MRLFSDVYLPRAFDGCTTERRRQNLKILFNNTTVMPFKWRGNYICFYCGKIYTDYGEFKKHTKSHGHCSIKDYSLKKIKGNYVEIKIDVSDVTCEICNEPFHRLKDIIDHLNGKHGLDYDKNIETPFQEYRLADFRCLYCEEQFSYFGHLVKHVNNAHPQNCYICDDCGVTFNKKRDMACHIRNYHKQGGYPCDLCLQHSDSLLCLRTHRNKAHFRRCYNCDLKFASLTLLQKHIEAEHPNRDSNIKCNYCSKEFHSSIGLRQHISKCKVKSVSLGTPNTGFTDIEAEPQKNRNLKQIRLNIQCVLNMSTATPFKFFSKYSCFYCSKKFTEFDEVKQHTNLEHPVCDLKSKCMKKCKGNSVFVKIDITALACKLCTLPMGNLDVLIEHLISEHKAKYDKSIQGCLEPFRIIKDNIPCPLCPDRVFRYFGILLRHMNTEHTNNNRICDFCGRTFRNVINLKVHLRYAHTGSCECDVCGKKFKNQWSLANHKSKTHDVKIYKCPKCPELFKAAYHKQRHLIEVHNIGHKCSDCDKMFTKNSNMREHVRRTHLKEKNVPCSVCNEKFFDKYLLRRHMVKHDGERKFECTICSKTFLRRSNLRSHLDIHKKHGHV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01180512;
90% Identity: -
80% Identity: -